GgaINT0008334 @ galGal3
Intron Retention
Gene
ENSGALG00000003743 | VPS37B
Description
NA
Coordinates
chr15:5281926-5289696:+
Coord C1 exon
chr15:5281926-5282036
Coord A exon
chr15:5282037-5289524
Coord C2 exon
chr15:5289525-5289696
Length
7488 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATGCACCTTTCTTCTTGCAGGCC
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCCGCCATGGCGCTGGACGCGGGGCGGCTGGAGGGGCTGAGCCTGCAGGAGCTCAGCGCGCTGCTGGACGATGAGGAGCGGCTGCAGGGCATGGCCCTTGAGATGGAAGAG
Seq A exon
GTGAGCGGAGCGCTGCGCGGTCATAGCGCCGGGATGCGGTCTCCCTTCTGTCTGTCCCGGGGCTCGGACGCCGGTTCCCCCCTTCTCCCCTCCGTCCTCCCGGCCTTTGTGTGGCGGCCGTGAGAGCGGCGGGCCGGCGGGGGGGGCTGACAGCGCCCGCCTGCTGCTGAGGAGCCACCGCCGGAGTGAAGGTGGCACCGGATTTTTCCCTGTTTTTTCCCTGCTGTTTTTTTTTTTCTTTATTTCCCTGTTGGGTCTCCCCCCCCCCCTTCTTTTATTTCCTCCCTTATTTTTTTCCTGTTTATCCCCATTTCCTCTGTTTGATGTAGCCCTTTTTTTCACGCCTGGGACAGCGGGGAGGGTTCTGTCAGGGTGTCCTGGCTGTGGGCTCAGTCCCAGCCCTCGGACCGTGAGAAGAACGGCTCTGTGCGGGGCTGCCCGGCCTGCTGCTGCTCCTCTGCTCTTGGAATGTCTTTGTCAGTGTGTCAGGCTCCGAGCCATGCGTCTGGGGCTGCGCTTGTTCACGTTAAATAGAAGCCTGTGTGCTTCGTGCTGCTGCCCTCCTCCTTTATGGGGTTTTCTGTGTGCCAGTGAACGCTGTATTACGGTGCTGATAGAGTCTCTCCCAGCAAACACTCCTAAAAGATCGACCAACAGCAAATAGGAAGAAGCATACGTGAAGGTTTTGAAAGAAATGCTCTCTGCTTCTCTGGCTCTTGTGTTAATCCTTTTTGTTTTAACGTAAAGAAGTCCCGGGGAGAAATTCTTGTCACTGTAACCCTTTTGGTGCTTCCAAGGAAATCGTTCTGGGTGACCTCCAACCAAACTGCTGGGGAGTCACAGATGGGGCAGCCCTGCAGGGCTGGGCTGGGGCAGGAAGGTGGCCCAGGGATGTTCCTGCTGTGCTGTCGGTCTTCTGTCCTTTGTATAGATAGATCTGTGCGTTGGGGCTGAGTGTAATGGCTTCTCAGAATACAAGCTTATGTGAAAACTTAAGAAACTGTTGAAGAAACTGATACTGCTGTAAGAGAGTAAAGCATGGGAAGACCTTAGAGACACTGGTGGATTACTGGGAGGCAGGAGAACCTCTCTGTGTAAAGACAAAATATTTAAGGAAAGTCAACAGGTTGCAATGGGCTTAGCTCAGTGCAGATGTGAACGGGTGCAGTATCACTGATTTCATGCAACCTCTGTCCAGGTTTATTGGTAAATGGCCTCATTCAACGAGCTGCTTGTTTTTTGTCAGTATGTGCTTCTGACTAGTTCAGAAGCAGCAGCAGACCTCATGACCTCAGTGCAAAGATTCTCTCTTACTGCAGAATTAGAGCGTATTCACAATGTGACCCTCCAGCTTTCCTCTTTAGTTGGCAGCAGAAGGCTTTTAAATTGTAGAGTAAAGTTCTCTGGGCCCGAGGGAATATTTTGTGGTGTTTGGAAAGTGTGGCTAGGTTTGAAGGTATTTGAGCTGTGTGGAAATACAGCGACACTGCTGTCTGCTGTAATCCTCTTTTATTGTACACAGAGGCTTTCAGTAGAGCCTGTCCAACTCAAAAGTGTTTGTCCATCTTGGAAGCAGCCATTCTTGAGTGCTTCATCCTCATTCTGTTTTGCCTTCGCTGAAGTTTTTGCTCCTTGGCTTTGTGCTCCTGGGTTCCGATTTTGCACTGTGAAGTATGCAGCAGGAAGAGGGAGAGGGAAATCCTGAGCATTAAGGAGGAACTGTGGTGACTTCACCATTGCTTGTGTAGAGATCTGGTTTTCGGTCTGTATGTACCTTTGCCATAGGGTTGTTCCAAAGTCCTTAAATTAATAATTTAACTGGGGCACACGAACTAAATTGTGATCTCTGAGTCACTCCTTTGAGATCACTTGTATTTTCGGTGGTAAAATTGGCTAAAGCTGATTATTTTGTAATGGAAGAAACCTTTGTACTCCTTGTTGCAAGGGAAACCCAGCTCAAAAAAAAAAACAAAAACAATGTTTTGTTCACAAAAAGAAGGATTTGGAAAATCACTTGGCTTTCTTGCTAATAGCTAAAAATAGGCTCCTTCCCAGCCCTAAAGGGAGCGTGCAGCACTTGAGCAGTATTTGTATGTGTCATCATGGGGGTGTATGCACATATCTATCTGTCTATCTATATATATAAAATCTCTGTGTGGTTGTGCACACATATATATTTCATTGGGGTAATATGCCTGTACAGTGTCCTGTGCACCATAGCCCCAGGTATGTGAAAACAGGGCATCAAAGAGCTAAGCTGATTTTTCTGTCTGTAAGGTTGTTTTTGAAGCCTCTGGGCTTTTAGCTCCTGAACAAGGAACATCTTGTCTATTGGAAAGAGGAAGGAAGCCAATTGTCTGGTACTCCCAGGCTTTTAAAACGGAGGAGTTTTTGTGATAATCCTTTGAGGTTAATCTCTGTTGTACATCGACAGGACTCATCTTCACAAAATAAAAGCACATTGTTCATAAAAGTCCGTCTCAGCAAATTTGTGATGTGATACTGGTGGTACTTCGATGAATTTCTGTGGTGAGAATTGGTTTTCTCTTGACCTGTGCTGGAACATTGCTTTAGGAACAGTACAGCATTGTGTTACTGTACGCTCGAGTTCTGCTGCCAGAAGTTGTTTGCTTTTCAAGACCTTAATTATATGAAATAGAGTCATCAAAAATGTAGTGCCTTCCTCTTGCTCCAGCATTTCGGAGTACACTGGCAAGCACGGGAGGGGTTTTCAATGTTACCCTATTCTCAAAAACTCTTTAAAGAAGCAGGGGGGCAGTGCAGAAAGTCCAAGTTCAAACTATGTGAATGCATGCCCAGATTGCTCGGATTCCTCATCCTGTCCTAAAACCACATTGTGTAAGTGGTTGTGTTCTTGTTTGCCAAACGTGGAATTTAGCTGCAGAGTTAGGGGTTAGATGTGGTGACAATGACCGAGTTCTGTGTTCCAGTGAGGCATTTGATGATAACCTGCCTGTGTGTGATGGCACCGACTGTGGCTCTGCGCAGCGCTTTCCTCTGGAGCAAACAGTGAGGACTTGAAACTCACCTCTTAACCTTTATTTCCTCATTTTTAAACCTAGTACTTACATAATTGGGAGACCTAAATTTAGCAAACCTAATTACTTTGGATTATGTATTAATATTAATTACAAAGCTGATGCCGTTAGAGGCTGTATTATCATTCACCAGCACTTGATGAAAAGCGCTCATACATCTTCTGTACCAGAAGTCTTTATTCTCCTCCTCTGCACCTGTTAGCTCCTATTTCAGGGGTTAATTTGTCACTCCAAATGTGCACAGTTGTACTTTTGCAGTGTCCCTAAGAATGAGTGGAAGAATGTGGCAATGCTGAAGGCTGGAAAAAGACCAGAGAAACCTAAAACGAAAGCGTGGATGCGTGCTATCTATAAAGCAATCAAAATGGAACAGTTTGTTTGTTTGTGTGGGCTTTTTTTGTTGTTTTATTTGTAGCTCCTGAAGAGACTTCTTTTTGAAAGCATCAGTAGGTGACTTGGGCACTTTTTAAGCATCTGAAGATTAGAAGGGCTGCACAAGCCCGGAATTTGGCTTTATTAACCTTACTGTGCATGCAGTTTGGTCTCAGAGTGCTCCACTCGATCCCTCTGCTCTGTTTGCCCCATTCAGGATTCATGGGGAGACCTCAACAGTAAAAAGAAGAAAAAAAAGAAAAAAAAAAAAGCAGTACCATCATCCCGTCTCATTATGTCTCATGATTCTGACTGGTATTTTTCATCTGTTTGAAGATTAAGGTTTCCTGCTTGCTGAAGTGCTCATGACCTCAAAGTCTTGTTAGCAACTCCGCTGGTTACGTGCTCTTTGCTCGCTGCTTCCGTTGGGCAGGTGAACGTCTGATGCAGTGCAGCAAATCCCTTCTGTATCAGTTTTTTGTTGCACAACAGGTCTGACAGCAAAATAACTTGTGTTGGATTTATTCCTTGCCTCTTCGGTTACAGCTGCTGTCCTGCGCTCGTGAAAGCCATGAAGCGATGCGGAGGGCATATGTTGTGCTCCACTGGTGATCTTAATGGGCTGATCATGCTGCACTGCTCCTTTGACACTCCTGTTATTTTGTAACTGTGTGTTTGTTGGTTTTTTAATTGGTCCACTCTTGGGAAGTTTTTCTTCAGGGCTTTTTAGGCTAAGTGTTTGCTTTTCATATTCCTTGAATTTACACCTAACTGTAGCGGAACATTTGCAGGAAAGATTATTAAGCTGAATTTGCATCCATGCCAGATATGATTCTGTTTTTTTAAAATTGTGATTGTATTCAAGTTGCACTGGTTTGTATTTGGGATTGTTATTTGTTCTATTTGTTATGAACAGAGTCTTGTCCCTCCACAAACTTGAAACTTCTTTCTGTGAGATGAAGCATTCAAACGTCCCATACGAATGAATGAGTCTTCACCTTTGCTTTGGAAATAAGTTGTTCTTTGGTTTGCCTTCTGATTGAAGGCTTGCTGCTTCTCAGTTTTGAGCAAGATTCTGTACAAATGTCTCATCTGCTCAGCAGCCCATCTTTTTAGAAATGTGACACAGAGTCTAATGCTGGAAGTGAGGGCACCTGATCATGACGTGTGAATCCTGTTTTTGATCAACTTCTGCAGAAAAGTGTGCCCTTCTTAGCAGCTTGTGGAAAGCATTGAGTCACTAAGTCTTGTGTAATTTCAAGAAAACTAAGAATATGTCAACTTTTCTTCTGTTTTAAATAAACCTATATTAGGCTTTCACCTAAACATGCATTAGACCACAAGGGTTAGATGTCAGTAGGTAAGGATAGCAGAGGGAATCACTCAGCGTTACACCTAGGTGCCTCACCTTTGCTTGTTTGCCATCAAGCCAGGTAAATATGTCTTTACAAGTGCTGTCGTAGTACTCATTGTTCCTTATATTTACAAGATATATCCTATTATGAGGATATTTATTCATCTTTACAGACTCATCATGCTGTAGAAGTCCTTCAGAAAGTCCTTGTAGAAAGCTGGGTGTTTGTTTCCTCATTCACAGCCTGACTGAGGGACGTCAGTTAGGGTGCCTGAGAGTTACTGGAGCTTCAGCTCGCTTCTGTTATTCTGCCTTTCTTCTCTTCTTTACAACATGTGATTTGAGCAATTTCCTTTCCCTGGGAGTCGTACTTGAAACATTTATAGATTTGTGTATCTTTCATTCCACCCTTTTTTCCTCTAGCAAAGAGGTACCTAACGTCGTCTTCATCCCAAAGAAAGATCAAAGTCCACCCATAAAACTGGTCTTCCAGGCTGACTGCACAGCCGCTTTGAAATGAGAACATCAGCTTTACCAGCAGAGAAAATGCAATCACCAGATCACATCTGAGTTGCTTGAAGGAAGTTGTTTGCTCATTAAAGTGCTGAAAGAGGAGCGGTGTCAGAAAGCGTTAATCTTTTAGTGCAGTCTTTGGCAGTTCAGAAGGCGCCTCCTTAACAAAACCTGTAGTGGAGGCAGGTAGTTTGGTAAGAAGCTGAGTGCCAGTCATTAAGCTGTGAAATAGCGTGCTTTTTGGTTCCATTCATAGTAGTTAGGAAAATATTGTAAAACAGGGACTTCAGCTTTTGAAAAGCAAGTCTAGCAGAGTTGGATCATGTGGGAACAAACAAATGAAAGCAACCGGTTTAATTTATATTATTTTGCATTGGATTCAAAAGTGAGAAGAGAAAGTTCTCTTTTTATTCTTGGAGTCTTCAACTTGAACACTTGGAAAGTGTTCAAGTTGAAGACAAGCAGAGGATTGGAAGCTGTTGAGGCTTGATGCGGGAATCCTGAGAAGACAAAACAGCATTACAAAGCCAGTTTCTCCCATTTGTACCACTTGGGAACAGAATTCTGTTTTGATTGATGCAGTCTTTAGGACTCAGCATTATCCTTTGGGATTGTTTTTTTTTTTTAAAGTTGTTTAGCAAGAACAAGGGGAAAGAAAGTGCAGCTTTGGTATTTCAGGAGCAGTATTTGGGGCCAAAGGTGTATCTAAGCCAAATTTGAAGTTAGCAGATTAAAGTGGCGTATGAATGTTCCTGAAGGAAGTGCTTTTGAAGATACTGTTGTACACTTGGGAAATATTTTCACCTGCCGCACCTACCCGTGTCCCCAAAGTGCCAAGAACACCTGAATTCTGATCCTCTCACTTTCAGGGGCTGTCAATAGCTCGTTCAGGTTTCCTCTTTTTCAAAGGTGTGGCACTCCTGTATCAGCCCGTGAGCACGAAAGGAGGAAGGCACTGTATCTTCCAGTTCTGCCCTGTACAAGGGGTGTATTGATGTAGGAGGTCACAAAAAGTGCACCAAACATGTCATTGATTTTGAGGGTGGATTAACAGAATCTGTCTGTTGTGCCATGGGAAAGTTGTCCCACTGAGTCAGACTGAAATCGGATCCCTTGCTTTTTATTCCGTTTTTTTTTTTTTTTTTTTTTCTGTCTGAATCTTTTAATGAATGTAATGTGACATCCAGGGCAGACTTTTCCAAACACCTGGCTTTCCCAAAGCTCGTGAAGGCTGCCTTGTTGAAATCATGAGCGTGTGTAGGTATGAGCAAACTTGGAATCCTGCTGGCATAGGGTTGGTGAGAATTGTCAGTTGTTCCTTAAGGATGGTGTCTTTGGGTAAGATAGCTTAACCCTTTTGCTTAACTTGAAACACAGACTTCAGCATTAATCCAGGTTTGATTTGACATCATTTGGGAAAAATATACTGGAGAAGGAACCCTAATGATGCACACCATGTTTTTTTTTTTTTTGTTTTGTTTTTCCTTCTAATAAGCTATAGGATTACACTCTTCTGCTCGTTGTATTTTACAGCTGGGATTCAGAGGGTTTTTTTTTTTAAAGAGCAACTTCTGCTTTAACTGTCAGTATTTGTGGTGGAGGGAAGGGGAGGATGAAGTATACTCTTCAAGTATTTGGAATAGAAGTAATTATCATTTCCAGCTTGGAGAATAAAACGTTGATGAAATGCCTGCTGCACGTGGGGAGGAAAAACATGCGAGAAGTGCCATCAGGTCGGTGTTAAATCCTGCTCAGAGCCATTAATTCGCAGGGGTTCCTGGCTGAAAGGGGAGAACTGTGTTCCCAGAGGAGTTGTTCAGGAGGGATTTGTGTCTGTATATGCCCTTAGCATACTCTTTGCTTCATAGACCTTCATATTTCTTCTAGCTGATAGGTGAGTAAAATAGCATATTTGTAAAGCAGCGAAAATGCAGTTTGCAAAAGAAGATTTTGCATAGCAGAGAAAGATTGTGGGGAATGAGCAGAAAAGCTGAAGCTGACCATACACACCAAAACAAGAGCCATTTCTACTTAAAGTCCAAAAGCATCTTTTCAGGTTCAATGCAGTAGAGCTGACTTCACGAAGAGCTTATTTCTCCCATTCACATTTTGAAATTTTGCAGTTGTCTGCATAACCATTAATGCTGCTTAATGTTTGTAATGCCATTTCATGCACCTTTCTTCTTGCAG
Seq C2 exon
GCCCAAAATGTTCAGCACAGCAAGGACATGACACTTGCCAGCAACCGCAGTCTGGCAGAAGGCAATCTTCTGTACCAGCCAAAGTTGGAGTCTTTGAAAGCAACTTTGACTCAGAAATATCAAGAGCTGCAAGTTCTTTTTGAAGCATACCAGATAAAGAAAACAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003743:ENSGALT00000005939:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=73.0)
A:
NA
C2:
PF072008=Mod_r=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]