GgaINT0008334 @ galGal4
Intron Retention
Gene
ENSGALG00000003743 | VPS37B
Description
vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr15:5226402-5234173:+
Coord C1 exon
chr15:5226402-5226513
Coord A exon
chr15:5226514-5234001
Coord C2 exon
chr15:5234002-5234173
Length
7488 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATGCACCTTTCTTCTTGCAGGCC
3' ss Score
10.87
Exon sequences
Seq C1 exon
CGCCGCCATGGCGCTGGACGCGGGGCGGCTGGAGGGGCTGAGCCTGCAGGAGCTCAGCGCGCTGCTGGACGATGAGGAGCGGCTGCAGGGCATGGCCCTTGAGATGGAAGAG
Seq A exon
GTGAGCGGAGCGCTGCGCGGTCATAGCGCCGGGATGCGGTCTCCCTTCTGTCTGTCCCGGGGCTCGGACGCCGGTTCCCCCCTTCTCCCCTCCGTCCTCCCGGCCTTTGTGTGGCGGCCGTGAGAGCGGCGGGCCGGCGGGGGGGGCTGACAGCGCCCGCCTGCTGCTGAGGAGCCACCGCCGGAGTGAAGGTGGCACCGGATTTTTCCCTGTTTTTTCCCTGCTGTTTTTTTTTTTCTTTATTTCCCTGTTGGGTCTCCCCCCCCCCCTTCTTTTATTTCCTCCCTTATTTTTTTCCTGTTTATCCCCATTTCCTCTGTTTGATGTAGCCCTTTTTTTCACGCCTGGGACAGCGGGGAGGGTTCTGTCAGGGTGTCCTGGCTGTGGGCTCAGTCCCAGCCCTCGGACCGTGAGAAGAACGGCTCTGTGCGGGGCTGCCCGGCCTGCTGCTGCTCCTCTGCTCTTGGAATGTCTTTGTCAGTGTGTCAGGCTCCGAGCCATGCGTCTGGGGCTGCGCTTGTTCACGTTAAATAGAAGCCTGTGTGCTTCGTGCTGCTGCCCTCCTCCTTTATGGGGTTTTCTGTGTGCCAGTGAACGCTGTATTACGGTGCTGATAGAGTCTCTCCCAGCAAACACTCCTAAAAGATCGACCAACAGCAAATAGGAAGAAGCATACGTGAAGGTTTTGAAAGAAATGCTCTCTGCTTCTCTGGCTCTTGTGTTAATCCTTTTTGTTTTAACGTAAAGAAGTCCCGGGGAGAAATTCTTGTCACTGTAACCCTTTTGGTGCTTCCAAGGAAATCGTTCTGGGTGACCTCCAACCAAACTGCTGGGGAGTCACAGATGGGGCAGCCCTGCAGGGCTGGGCTGGGGCAGGAAGGTGGCCCAGGGATGTTCCTGCTGTGCTGTCGGTCTTCTGTCCTTTGTATAGATAGATCTGTGCGTTGGGGCTGAGTGTAATGGCTTCTCAGAATACAAGCTTATGTGAAAACTTAAGAAACTGTTGAAGAAACTGATACTGCTGTAAGAGAGTAAAGCATGGGAAGACCTTAGAGACACTGGTGGATTACTGGGAGGCAGGAGAACCTCTCTGTGTAAAGACAAAATATTTAAGGAAAGTCAACAGGTTGCAATGGGCTTAGCTCAGTGCAGATGTGAACGGGTGCAGTATCACTGATTTCATGCAACCTCTGTCCAGGTTTATTGGTAAATGGCCTCATTCAACGAGCTGCTTGTTTTTTGTCAGTATGTGCTTCTGACTAGTTCAGAAGCAGCAGCAGACCTCATGACCTCAGTGCAAAGATTCTCTCTTACTGCAGAATTAGAGCGTATTCACAATGTGACCCTCCAGCTTTCCTCTTTAGTTGGCAGCAGAAGGCTTTTAAATTGTAGAGTAAAGTTCTCTGGGCCCGAGGGAATATTTTGTGGTGTTTGGAAAGTGTGGCTAGGTTTGAAGGTATTTGAGCTGTGTGGAAATACAGCGACACTGCTGTCTGCTGTAATCCTCTTTTATTGTACACAGAGGCTTTCAGTAGAGCCTGTCCAACTCAAAAGTGTTTGTCCATCTTGGAAGCAGCCATTCTTGAGTGCTTCATCCTCATTCTGTTTTGCCTTCGCTGAAGTTTTTGCTCCTTGGCTTTGTGCTCCTGGGTTCCGATTTTGCACTGTGAAGTATGCAGCAGGAAGAGGGAGAGGGAAATCCTGAGCATTAAGGAGGAACTGTGGTGACTTCACCATTGCTTGTGTAGAGATCTGGTTTTCGGTCTGTATGTACCTTTGCCATAGGGTTGTTCCAAAGTCCTTAAATTAATAATTTAACTGGGGCACACGAACTAAATTGTGATCTCTGAGTCACTCCTTTGAGATCACTTGTATTTTCGGTGGTAAAATTGGCTAAAGCTGATTATTTTGTAATGGAAGAAACCTTTGTACTCCTTGTTGCAAGGGAAACCCAGCTCAAAAAAAAAAACAAAAACAATGTTTTGTTCACAAAAAGAAGGATTTGGAAAATCACTTGGCTTTCTTGCTAATAGCTAAAAATAGGCTCCTTCCCAGCCCTAAAGGGAGCGTGCAGCACTTGAGCAGTATTTGTATGTGTCATCATGGGGGTGTATGCACATATCTATCTGTCTATCTATATATATAAAATCTCTGTGTGGTTGTGCACACATATATATTTCATTGGGGTAATATGCCTGTACAGTGTCCTGTGCACCATAGCCCCAGGTATGTGAAAACAGGGCATCAAAGAGCTAAGCTGATTTTTCTGTCTGTAAGGTTGTTTTTGAAGCCTCTGGGCTTTTAGCTCCTGAACAAGGAACATCTTGTCTATTGGAAAGAGGAAGGAAGCCAATTGTCTGGTACTCCCAGGCTTTTAAAACGGAGGAGTTTTTGTGATAATCCTTTGAGGTTAATCTCTGTTGTACATCGACAGGACTCATCTTCACAAAATAAAAGCACATTGTTCATAAAAGTCCGTCTCAGCAAATTTGTGATGTGATACTGGTGGTACTTCGATGAATTTCTGTGGTGAGAATTGGTTTTCTCTTGACCTGTGCTGGAACATTGCTTTAGGAACAGTACAGCATTGTGTTACTGTACGCTCGAGTTCTGCTGCCAGAAGTTGTTTGCTTTTCAAGACCTTAATTATATGAAATAGAGTCATCAAAAATGTAGTGCCTTCCTCTTGCTCCAGCATTTCGGAGTACACTGGCAAGCACGGGAGGGGTTTTCAATGTTACCCTATTCTCAAAAACTCTTTAAAGAAGCAGGGGGGCAGTGCAGAAAGTCCAAGTTCAAACTATGTGAATGCATGCCCAGATTGCTCGGATTCCTCATCCTGTCCTAAAACCACATTGTGTAAGTGGTTGTGTTCTTGTTTGCCAAACGTGGAATTTAGCTGCAGAGTTAGGGGTTAGATGTGGTGACAATGACCGAGTTCTGTGTTCCAGTGAGGCATTTGATGATAACCTGCCTGTGTGTGATGGCACCGACTGTGGCTCTGCGCAGCGCTTTCCTCTGGAGCAAACAGTGAGGACTTGAAACTCACCTCTTAACCTTTATTTCCTCATTTTTAAACCTAGTACTTACATAATTGGGAGACCTAAATTTAGCAAACCTAATTACTTTGGATTATGTATTAATATTAATTACAAAGCTGATGCCGTTAGAGGCTGTATTATCATTCACCAGCACTTGATGAAAAGCGCTCATACATCTTCTGTACCAGAAGTCTTTATTCTCCTCCTCTGCACCTGTTAGCTCCTATTTCAGGGGTTAATTTGTCACTCCAAATGTGCACAGTTGTACTTTTGCAGTGTCCCTAAGAATGAGTGGAAGAATGTGGCAATGCTGAAGGCTGGAAAAAGACCAGAGAAACCTAAAACGAAAGCGTGGATGCGTGCTATCTATAAAGCAATCAAAATGGAACAGTTTGTTTGTTTGTGTGGGCTTTTTTTGTTGTTTTATTTGTAGCTCCTGAAGAGACTTCTTTTTGAAAGCATCAGTAGGTGACTTGGGCACTTTTTAAGCATCTGAAGATTAGAAGGGCTGCACAAGCCCGGAATTTGGCTTTATTAACCTTACTGTGCATGCAGTTTGGTCTCAGAGTGCTCCACTCGATCCCTCTGCTCTGTTTGCCCCATTCAGGATTCATGGGGAGACCTCAACAGTAAAAAGAAGAAAAAAAAGAAAAAAAAAAAAGCAGTACCATCATCCCGTCTCATTATGTCTCATGATTCTGACTGGTATTTTTCATCTGTTTGAAGATTAAGGTTTCCTGCTTGCTGAAGTGCTCATGACCTCAAAGTCTTGTTAGCAACTCCGCTGGTTACGTGCTCTTTGCTCGCTGCTTCCGTTGGGCAGGTGAACGTCTGATGCAGTGCAGCAAATCCCTTCTGTATCAGTTTTTTGTTGCACAACAGGTCTGACAGCAAAATAACTTGTGTTGGATTTATTCCTTGCCTCTTCGGTTACAGCTGCTGTCCTGCGCTCGTGAAAGCCATGAAGCGATGCGGAGGGCATATGTTGTGCTCCACTGGTGATCTTAATGGGCTGATCATGCTGCACTGCTCCTTTGACACTCCTGTTATTTTGTAACTGTGTGTTTGTTGGTTTTTTAATTGGTCCACTCTTGGGAAGTTTTTCTTCAGGGCTTTTTAGGCTAAGTGTTTGCTTTTCATATTCCTTGAATTTACACCTAACTGTAGCGGAACATTTGCAGGAAAGATTATTAAGCTGAATTTGCATCCATGCCAGATATGATTCTGTTTTTTTAAAATTGTGATTGTATTCAAGTTGCACTGGTTTGTATTTGGGATTGTTATTTGTTCTATTTGTTATGAACAGAGTCTTGTCCCTCCACAAACTTGAAACTTCTTTCTGTGAGATGAAGCATTCAAACGTCCCATACGAATGAATGAGTCTTCACCTTTGCTTTGGAAATAAGTTGTTCTTTGGTTTGCCTTCTGATTGAAGGCTTGCTGCTTCTCAGTTTTGAGCAAGATTCTGTACAAATGTCTCATCTGCTCAGCAGCCCATCTTTTTAGAAATGTGACACAGAGTCTAATGCTGGAAGTGAGGGCACCTGATCATGACGTGTGAATCCTGTTTTTGATCAACTTCTGCAGAAAAGTGTGCCCTTCTTAGCAGCTTGTGGAAAGCATTGAGTCACTAAGTCTTGTGTAATTTCAAGAAAACTAAGAATATGTCAACTTTTCTTCTGTTTTAAATAAACCTATATTAGGCTTTCACCTAAACATGCATTAGACCACAAGGGTTAGATGTCAGTAGGTAAGGATAGCAGAGGGAATCACTCAGCGTTACACCTAGGTGCCTCACCTTTGCTTGTTTGCCATCAAGCCAGGTAAATATGTCTTTACAAGTGCTGTCGTAGTACTCATTGTTCCTTATATTTACAAGATATATCCTATTATGAGGATATTTATTCATCTTTACAGACTCATCATGCTGTAGAAGTCCTTCAGAAAGTCCTTGTAGAAAGCTGGGTGTTTGTTTCCTCATTCACAGCCTGACTGAGGGACGTCAGTTAGGGTGCCTGAGAGTTACTGGAGCTTCAGCTCGCTTCTGTTATTCTGCCTTTCTTCTCTTCTTTACAACATGTGATTTGAGCAATTTCCTTTCCCTGGGAGTCGTACTTGAAACATTTATAGATTTGTGTATCTTTCATTCCACCCTTTTTTCCTCTAGCAAAGAGGTACCTAACGTCGTCTTCATCCCAAAGAAAGATCAAAGTCCACCCATAAAACTGGTCTTCCAGGCTGACTGCACAGCCGCTTTGAAATGAGAACATCAGCTTTACCAGCAGAGAAAATGCAATCACCAGATCACATCTGAGTTGCTTGAAGGAAGTTGTTTGCTCATTAAAGTGCTGAAAGAGGAGCGGTGTCAGAAAGCGTTAATCTTTTAGTGCAGTCTTTGGCAGTTCAGAAGGCGCCTCCTTAACAAAACCTGTAGTGGAGGCAGGTAGTTTGGTAAGAAGCTGAGTGCCAGTCATTAAGCTGTGAAATAGCGTGCTTTTTGGTTCCATTCATAGTAGTTAGGAAAATATTGTAAAACAGGGACTTCAGCTTTTGAAAAGCAAGTCTAGCAGAGTTGGATCATGTGGGAACAAACAAATGAAAGCAACCGGTTTAATTTATATTATTTTGCATTGGATTCAAAAGTGAGAAGAGAAAGTTCTCTTTTTATTCTTGGAGTCTTCAACTTGAACACTTGGAAAGTGTTCAAGTTGAAGACAAGCAGAGGATTGGAAGCTGTTGAGGCTTGATGCGGGAATCCTGAGAAGACAAAACAGCATTACAAAGCCAGTTTCTCCCATTTGTACCACTTGGGAACAGAATTCTGTTTTGATTGATGCAGTCTTTAGGACTCAGCATTATCCTTTGGGATTGTTTTTTTTTTTTAAAGTTGTTTAGCAAGAACAAGGGGAAAGAAAGTGCAGCTTTGGTATTTCAGGAGCAGTATTTGGGGCCAAAGGTGTATCTAAGCCAAATTTGAAGTTAGCAGATTAAAGTGGCGTATGAATGTTCCTGAAGGAAGTGCTTTTGAAGATACTGTTGTACACTTGGGAAATATTTTCACCTGCCGCACCTACCCGTGTCCCCAAAGTGCCAAGAACACCTGAATTCTGATCCTCTCACTTTCAGGGGCTGTCAATAGCTCGTTCAGGTTTCCTCTTTTTCAAAGGTGTGGCACTCCTGTATCAGCCCGTGAGCACGAAAGGAGGAAGGCACTGTATCTTCCAGTTCTGCCCTGTACAAGGGGTGTATTGATGTAGGAGGTCACAAAAAGTGCACCAAACATGTCATTGATTTTGAGGGTGGATTAACAGAATCTGTCTGTTGTGCCATGGGAAAGTTGTCCCACTGAGTCAGACTGAAATCGGATCCCTTGCTTTTTATTCCGTTTTTTTTTTTTTTTTTTTTTCTGTCTGAATCTTTTAATGAATGTAATGTGACATCCAGGGCAGACTTTTCCAAACACCTGGCTTTCCCAAAGCTCGTGAAGGCTGCCTTGTTGAAATCATGAGCGTGTGTAGGTATGAGCAAACTTGGAATCCTGCTGGCATAGGGTTGGTGAGAATTGTCAGTTGTTCCTTAAGGATGGTGTCTTTGGGTAAGATAGCTTAACCCTTTTGCTTAACTTGAAACACAGACTTCAGCATTAATCCAGGTTTGATTTGACATCATTTGGGAAAAATATACTGGAGAAGGAACCCTAATGATGCACACCATGTTTTTTTTTTTTTTGTTTTGTTTTTCCTTCTAATAAGCTATAGGATTACACTCTTCTGCTCGTTGTATTTTACAGCTGGGATTCAGAGGGTTTTTTTTTTTAAAGAGCAACTTCTGCTTTAACTGTCAGTATTTGTGGTGGAGGGAAGGGGAGGATGAAGTATACTCTTCAAGTATTTGGAATAGAAGTAATTATCATTTCCAGCTTGGAGAATAAAACGTTGATGAAATGCCTGCTGCACGTGGGGAGGAAAAACATGCGAGAAGTGCCATCAGGTCGGTGTTAAATCCTGCTCAGAGCCATTAATTCGCAGGGGTTCCTGGCTGAAAGGGGAGAACTGTGTTCCCAGAGGAGTTGTTCAGGAGGGATTTGTGTCTGTATATGCCCTTAGCATACTCTTTGCTTCATAGACCTTCATATTTCTTCTAGCTGATAGGTGAGTAAAATAGCATATTTGTAAAGCAGCGAAAATGCAGTTTGCAAAAGAAGATTTTGCATAGCAGAGAAAGATTGTGGGGAATGAGCAGAAAAGCTGAAGCTGACCATACACACCAAAACAAGAGCCATTTCTACTTAAAGTCCAAAAGCATCTTTTCAGGTTCAATGCAGTAGAGCTGACTTCACGAAGAGCTTATTTCTCCCATTCACATTTTGAAATTTTGCAGTTGTCTGCATAACCATTAATGCTGCTTAATGTTTGTAATGCCATTTCATGCACCTTTCTTCTTGCAG
Seq C2 exon
GCCCAAAATGTTCAGCACAGCAAGGACATGACACTTGCCAGCAACCGCAGTCTGGCAGAAGGCAATCTTCTGTACCAGCCAAAGTTGGAGTCTTTGAAAGCAACTTTGACTCAGAAATATCAAGAGCTGCAAGTTCTTTTTGAAGCATACCAGATAAAGAAAACAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003743:ENSGALT00000005939:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=73.0)
A:
NA
C2:
PF072008=Mod_r=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]