GgaINT0010702 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2603577-2604064:-
Coord C1 exon
chr20:2603961-2604064
Coord A exon
chr20:2603716-2603960
Coord C2 exon
chr20:2603577-2603715
Length
245 bp
Sequences
Splice sites
5' ss Seq
GATGTATGT
5' ss Score
6.31
3' ss Seq
GCTGCTTTGTCTCCCCTCAGCAT
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATATGCTGCTGCTCTCCCTCAACCCCTACGATTACCACTTCTGCTCTCAGGGCGTAACAACTGTGGACAACTTGGATGACGGCGAGGAGCTCATGGCAACAGAT
Seq A exon
GTATGTGCACTTCCTTCGTGCCACAGAGCCAGCAGTCGGGGCCTGGGGGAGGGCATGGGTGTCTTGTGGGAGCTGAGCTCACAGTCGTGTCTTCATAGAGTGGGATTTCTCGGCCAGATGTTCACCAACTAGAGCACCCTGTCCCACTCAGCCCCGGAATAGGAAAAACACAATGGGAGACAATGGGAGCGCCTCACCTCAGGGTGCTGATTTTGTTCTGTCTATGCTGCTTTGTCTCCCCTCAG
Seq C2 exon
CATGCCATGGACATCCTGGGCTTCAGCAATGATGAGAAATACGGCTCCTATAAAATAGTGGGCGCTATCATGCACTTTGGCAACATGAAGTTCAAGCAAAAGCAGCGGGAAGAGCAGGCAGAGGCTGACGGCACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCTGCTGCTCTCCCTCA
R:
TTTCAGTGCCGTCAGCCTCT
Band lengths:
243-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]