RnoINT0096550 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151134943-151135348:+
Coord C1 exon
chr3:151134943-151135046
Coord A exon
chr3:151135047-151135209
Coord C2 exon
chr3:151135210-151135348
Length
163 bp
Sequences
Splice sites
5' ss Seq
GATGTATGC
5' ss Score
3.89
3' ss Seq
TGCTTTGTTCTCCTACTCAGCAT
3' ss Score
6.95
Exon sequences
Seq C1 exon
ACATGCTGCTCCTCTCCATGAACCCCTACGACTACCACTTCTGCAGTCAGGGGGTCACCACCGTGGATAACATGAACGACGGGGAGGAGCTTATCGCCACTGAT
Seq A exon
GTATGCTCCGTGGGGGGAATGGGGTGGGGTGGGCGGTGGGACCAAGCGCATGTGTGAACATGCGCACTGGGGAGAGACCGGGAAATAGGATGAGTGGGGTGGTCCTCGGCGAGACTCTCTAGGACCCCATACTTTCCTGAGCCTGCTTTGTTCTCCTACTCAG
Seq C2 exon
CATGCAATGGACATCCTGGGCTTCAGCGTGGATGAGAAGTGCGCATGCTATAAGATCGTGGGCGCCCTCCTGCACTTTGGCAACATGAAGTTCAAACAGAAGCAGAGAGAGGAACAGGCTGAGGCAGACGGCACTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTGCTCCTCTCCATGA
R:
TCTCAGTGCCGTCTGCCTC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]