MmuINT0103607 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155620090-155620525:+
Coord C1 exon
chr2:155620090-155620193
Coord A exon
chr2:155620194-155620386
Coord C2 exon
chr2:155620387-155620525
Length
193 bp
Sequences
Splice sites
5' ss Seq
GATGTACGA
5' ss Score
2.26
3' ss Seq
CTTGGTTCCTTCTACATCAGCAT
3' ss Score
3.28
Exon sequences
Seq C1 exon
ACATGCTGCTCCTGTCCATGAATCCCTACGACTACCACTTCTGCAGCCAGGGGGTCACCACTGTGGACAACATGGATGACGGCGAGGAACTTATCGCCACTGAT
Seq A exon
GTACGATGCTCTGTGGGGGAAACGGGGTGGGCGTGGGGGTGGGAGGGGGCACCAGGCTGGATTCCCATGGGTTGGGTGTGTGTGAGTATATGCACTGGGTCGAGACCGGGGAATTAGTATGAGTGGGGTGGTCCTCGGCGAGACTCTCAAGGACTCATATTTCTCTGAGCCTGCTTGGTTCCTTCTACATCAG
Seq C2 exon
CATGCAATGGATATCCTGGGCTTCAGTGTGGATGAGAAGTGTGCCTGCTATAAGATCGTGGGTGCTCTCCTGCACTTTGGCAACATGAAGTTCAAACAGAAGCAGAGAGAGGAACAGGCTGAGGCAGACGGCACTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTCCTGTCCATGAA
R:
TCTCAGTGCCGTCTGCCTC
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types