GgaINT0010708 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2599765-2600472:-
Coord C1 exon
chr20:2600340-2600472
Coord A exon
chr20:2599842-2600339
Coord C2 exon
chr20:2599765-2599841
Length
498 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCATATTTTAACCCGACAGAGG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTGCCGTACAACATCATTGGGTGGCTGGACAAAAACAAGGACCCCCTGAATGAGACAGTGGTGGCCGTCTTTCAAAAATCCCAAAACAAGCTCCTGGCCTCTCTCTATGAGAACTATGTGGGCTCCAGCTCAG
Seq A exon
GTGAGGAACAACATCATCCTTCTTTGAGCTGTACTTTGATCCCTTAACAGCAAAGCCTCATCACACCCATGTCCAGCTGTAGGTGGAGCAGCCTGGGCAAAGGGAGGACCCATACCAACTTTTAAAACCTCCCACCTGGGTGGGTACTCTGGATGTGCAACACTAGCCTAGGGGCTTTAGGTGGCTATGCAGAAGCAGGCTGAGCCTATGAGGGGCCGTACTGCTGTCCTGGTAGACCTGCAAGAAGTGACATAGTGTGTGTGAAGGGCTGACCCGTTGACAAGAGATGGGGGATGACACACAGAGCTGGATGCTGTGAGAGGAGTTTTTGTCAGGCTAAGTCTGCAGCTGGGCGTTACTATCTCTGCTTTACAGAGAGCAGGGGCTGTGGGCATATCACTGACATTTTCAGTGCAGAGGTGCTTGGAGGTGCTATGGAGTCCTTCAAAGCAAACTGATGCTTTGCTGATGTACTTAATCCATATTTTAACCCGACAG
Seq C2 exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGTACAACATCATTGGGT
R:
GTGCAGCTGGGACACTGTTT
Band lengths:
206-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]