GgaINT0010708 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2955558-2956265:-
Coord C1 exon
chr20:2956133-2956265
Coord A exon
chr20:2955635-2956132
Coord C2 exon
chr20:2955558-2955634
Length
498 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCATATTTTAACCCGACAGAGG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTGCCGTACAACATCATTGGGTGGCTGGACAAAAACAAGGACCCCCTGAATGAGACAGTGGTGGCCGTCTTTCAAAAATCCCAAAACAAGCTCCTGGCCTCTCTCTATGAGAACTATGTGGGCTCCAGCTCAG
Seq A exon
GTGAGGAACAACATCATCCTTCTTTGAGCTGTACTTTGATCCCTTAACAGCAAAGCCTCATCACACCCATGTCCAGCTGTAGGTGGAGCAGCCTGGGCAAAGGGAGGACCCATACCAACTTTTAAAACCTCCCACCTGGGTGGGTACTCTGGATGTGCAACACTAGCCTAGGGGCTTTAGGTGGCTATGCAGAAGCAGGCTGAGCCTATGAGGGGCCGTACTGCTGTCCTGGTAGACCTGCAAGAAGTGACATAGTGTGTGTGAAGGGCTGACCCGTTGACAAGAGATGGGGGATGACACACAGAGCTGGATGCTGTGAGAGGAGTTTTTGTCAGGCTAAGTCTGCAGCTGGGCGTTACTATCTCTGCTTTACAGAGAGCAGGGGCTGTGGGCATATCACTGACATTTTCAGTGCAGAGGTGCTTGGAGGTGCTATGGAGTCCTTCAAAGCAAACTGATGCTTTGCTGATGTACTTAATCCATATTTTAACCCGACAG
Seq C2 exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGTACAACATCATTGGGT
R:
GTGCAGCTGGGACACTGTTT
Band lengths:
206-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]