HsaINT0107888 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33577817-33578113:+
Coord C1 exon
chr20:33577817-33577949
Coord A exon
chr20:33577950-33578036
Coord C2 exon
chr20:33578037-33578113
Length
87 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AGGCCCCTTGTCTCTATTAGCTG
3' ss Score
4.44
Exon sequences
Seq C1 exon
GTGCCTTACAGCATTGTGGGCTGGCTGGAGAAAAACAAGGATCCCCTGAATGAGACCGTGGTCCCCATCTTCCAGAAGTCACAGAATAGGCTCCTGGCGACTCTCTATGAGAATTATGCGGGCTCCTGCTCCA
Seq A exon
GTGAGTATGGAGGGACAAGATCTCCACTCTGACAGGGGCCCACAGAGCGACATTCCCTGGAGTGACCAGGCCCCTTGTCTCTATTAG
Seq C2 exon
CTGAGCCCCCCAAGTCTGGGGTGAAAGAGAAGCGTAAGAAGGCAGCATCGTTCCAGACGGTGTCCCAGCTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGCTGGAGAAAAACAA
R:
CTGGAACGATGCTGCCTTCTT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)