RnoINT0096556 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151138420-151138715:+
Coord C1 exon
chr3:151138420-151138552
Coord A exon
chr3:151138553-151138638
Coord C2 exon
chr3:151138639-151138715
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ATTCTCATTATCTCTCCTAGCCG
3' ss Score
5.67
Exon sequences
Seq C1 exon
GTACCTTATAGCATTGTGGGCTGGCTGGAGAAAAACAAGGACCCCCTCAATGAGACCGTGGTCCCCATCTTCCAAAAGTCACAGAATAGGCTCTTGGCCACCCTCTATGAGAACTATGCAGGTTCTTGCTCCA
Seq A exon
GTAAGTACTGAGGGACAAGCTGGCCATTTCTGGGGATCCACAGAGTCATGTTCCCTGGCCTGATCAATTCTCATTATCTCTCCTAG
Seq C2 exon
CCGAGCCCCCCAAGTCTGGGGTGAAAGAGAAACGAAAGAAAGCAGCATCATTTCAGACAGTGTCTCAGCTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCCCCTCAATGAGACC
R:
TGTGAAGCTGAGACACTGTCTG
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]