GgaINT0010728 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2944788-2945238:-
Coord C1 exon
chr20:2945123-2945238
Coord A exon
chr20:2944981-2945122
Coord C2 exon
chr20:2944788-2944980
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
ACACATCGTCCCTCCCGCAGGCG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGCCCTGGAGCATGAGGAGAGCAAGACGCTGCGCATCCAGCTGGAGCTGAACCAGATCAAGGCTGATGTGGACAGGAAGCTGGCAGAGAAGGATGAGGAGTTTGAGAACCTGAG
Seq A exon
GTGCGTGTGGCATGGGGACAGGCTGGGCTGTTGCTGTGGGCTGAGCCAGCACCATGGCCATGATGAGACAAGCACCTCTGGCTGAGGCTGACCCGGACAGATGTCCCCCGTGAGTGGGGCTGACACATCGTCCCTCCCGCAG
Seq C2 exon
GCGCAACCACCAGCGTGCCATGGACTCCATGCAGGCCACGCTGGATGCTGAGGCTCGGGCCAAGAATGAGGCTGTCCGGCTGAGGAAGAAGATGGAGGGAGACCTGAACGAGATGGAGATCCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGTTCCAGAAACTGGGCCGCCAGCTGCAGGCCCAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCATGAGGAGAGCAAGA
R:
ATGGCTCAGCTGGATCTCCAT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]