RnoINT0096575 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151147944-151148753:+
Coord C1 exon
chr3:151147944-151148059
Coord A exon
chr3:151148060-151148356
Coord C2 exon
chr3:151148357-151148753
Length
297 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTCT
5' ss Score
-0.45
3' ss Seq
CTCACGCCACCTTCTTACAGGCG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GGGGCGCTGGAGCTGGAAGAGACAAAGACCCTGCGGATCCAGTTGGAGTTGTCCCAGGTCAAGGCGGAAGTGGACCGAAAGCTGGCGGAGAAGGATGAGGAGTGTACTAACCTGAG
Seq A exon
GTCTCTGCTTATGGTGGCACACAGGACAGACTAGCTGTCCCCGCTACAGGGTTAGAGTGTTCCCATTCCAGAGGTGACCCTCCACAAGATGCTCGGGGCCAAAGTTCAGTCCATGCCCTTCTCGGTCTCCAGTGAATGAACTTTTTTTGACAAGTCACAAGGGGCTTGAAAACAGAAGCGATTCATTTGCTCCCCAAATGGGTTCCCAGCTCTGTGGGTCCCTGAGCGTGCCACAGGTAGTGCCCGACCTCCTCCATTCCTGTAGGCCAAGCTTGCCCTCACGCCACCTTCTTACAG
Seq C2 exon
GCGCAACCACCAGCGGGCTGTGGAGTCCTTGCAGGCCTCCCTGGATGCCGAGACTAGGGCCCGCAATGAAGCACTGCGTCTCAAGAAGAAGATGGAGGGGGACCTCAATGACCTGGAGTTACAGCTGGGCCACGCAACCCGCCAGGCCATGGAGGCACAGGCAGCCACGAGGCTGCTTCAGGCCCAACTCAAGGAGGAGCAAGCAGGGCGTGATGAGGAGCAGAGGCTGGCTGCCGAGCTCCGCGAGCAGGGCCAGGCCCTCGAGCGCAGGGCTGCACTGCTGGCATCTGAGCTGGAAGAGCTTCGGGCCGCCCTGGAACAGGGCGAGCGCAGCCGAAGGCTGGCTGAACAGGAGCTGTTGGAGGCCACAGAGCGCCTCAACCTACTGCATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.677
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.4=100),PF045827=Reo_sigmaC=PD(3.4=12.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACAAAGACCCTGCGG
R:
GCTTGCTCCTCCTTGAGTTGG
Band lengths:
305-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]