GgaINT0011716 @ galGal3
Intron Retention
Gene
ENSGALG00000007786 | DOK5
Description
NA
Coordinates
chr20:12225458-12226518:-
Coord C1 exon
chr20:12226399-12226518
Coord A exon
chr20:12225648-12226398
Coord C2 exon
chr20:12225458-12225647
Length
751 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
Exon sequences
Seq C1 exon
AACTTGAGGCAGATGAGTGGTGCAAGGTATTGCAGATGGAGTGTCTTGGGACACGAATTAATGACATTAGCCTTGGAGAGCCTGACTTGTTGGCATCGGGAGTGGAGAGGGAGCAGAATG
Seq A exon
GTACGTACATAACATACTGACTTCTTAAATCTTTTGTTACTTTATTTTAAAGTCATTTGGACTGCACGTGAGAACATCAAAAATAAATTGGTACCAAAAATTGTTTTTTGGCACCAATCAAGAAACCAAGCCCCCCGTCCTGTTTGTTCTTTTAATTGCCACCAGAAATAATGAGCATGGTAATAAGGTGCTGTAATTCAGGGCTTTAGAATTCTTTCGGATTAGCACTTTTCTTCTCAGACAATTTAGGTGACCTTGGAGATGGAAACTGTATTTTTGTTCTGTGTTTTTATATTGTGTCTGTACAACAGTTTCAACCTCTGACTGAGGCTATTTATCAACACTGTTAAAGCAAATAATAAATAACAATAATTGCATGCAGAACCCGAGCCCTCAGCTACTTCACTTTCCTATGCAAATTAACTAATTATATGCACAAAAGCACTTGCAGTGTATTTATTCATGCACACAGTTGTATTAATTGTTTGCAAATATCAGGATTATGATGGTTCAGATCTCTTCTGCATCTCAACACGTGCCCAAATGTTTGATGCCCTTTGAGTGCAGCGTTTTGATTGCTCCATACATTGAGTTTGCTGAGTTATTGGAAGGAATTGAGTCTTTATTTTTGAAATAATTGTTCAAAATGGAAATAAGATCTTTTAATAGAGGTGGAAAATAGGAAATTCCTTTATTGACTTCGACAGTTGACGGGCAGGGATTTTAGACTAACCTTTTGTTTTTCTCCCAG
Seq C2 exon
AGAGATTCAATGTGTATTTGATGCCATCCCCTAACTTAGATGTGCATGGGGAATGTACCTTGCAGATAACATTTGAGAATATCTGTCTTTGGGACATCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCATTAAGTGCCCTCCGACGCTACGGGCGGGACCCTTCTTGGTTCACCTTTGAAGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786:ENSGALT00000012627:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGAGGCAGATGAGTGGTG
R:
CTCCCTGCTTCAAAGGTGAACC
Band lengths:
310-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]