MmuINT0052604 @ mm10
Intron Retention
Gene
ENSMUSG00000027560 | Dok5
Description
docking protein 5 [Source:MGI Symbol;Acc:MGI:1924079]
Coordinates
chr2:170830069-170833071:+
Coord C1 exon
chr2:170830069-170830188
Coord A exon
chr2:170830189-170832881
Coord C2 exon
chr2:170832882-170833071
Length
2693 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
ACGTTTTGTTTTTCTCCCAGAGA
3' ss Score
8.99
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAAGTTCTCCAGATGGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAGCCTGATTTATTGGCTACCGGGGTGGAACGCGAGCAGAGCG
Seq A exon
GTATGTATGCCAAGTTTGCGCCGCCCATCTCTCTCCTAAACTGTTTTGCTCCCGTATGATGACACACAAGGCGTCCTCATCCTATACATTCTGAGTTATAAATATGTATGAAGAAGTTATAATAGCAGTCTATGTAAATGACGCAGTGAATGCTTTCCTCAAACGTTCTGTAATCTATAGTAGAAAAAAATCAACATTAATGGTTTCAGTCAGAAATGTTGAGGATCACAAGGTGTGCCAACGGAATGGAAGATGCTTATGAATATCCAACTGTTACATTTGCACAGAAGTCCCACCCTAGAGATGGTAGGACTCCCCCTCATTTTGTAGATGAGGTAAACACCTTGTTCCAAACGTACTATGGGCATTTGAAACTAGACTATGATCGTAGGCCTCTATTTACTACGATCAGACTTCAAAGTGTGATAATTTTCACCTTGCTGTTTCACTTAAAGTATGTTTGAACACTGTCCAATGTTCTTAATAGAATTTAACCCCAACCCTGAATATTTCATCAAGTTTAAACCCACTTAAAAACGGTGATTTAAAAGTAAAATTCAACCCCTGAGCCAACTCAGCTCAACACAGCATCGAGGAATAAATCTTTTAAAATAATCATGACCAAAATATTCATGAACACTTTAGCAAAAATCAATGTTCATTCATAGTCTGAGCCTAGAATAATTGCTTCATCTCCAAATAGCTCAGCCTAGTGGCTGGGGGATTGGATGCCACGGGTCTGCTTCAAAGCCTGCCTTGATCTACGAGCTCTTGTCAGAGTGGCGGGGGCTCTGGGTCACCTGGATGGATGGCAGACATGACTCAGGTGGAATTGCATTGGTGGTCTCCATGCCCACTCCAGTTGTTAGTTAAAACTGTGCTCCCTCCCTCCCAAGCAGTGCTGTGTCCTCATGACACATTTACAGTCTTTGCCCACCCTGAATGTACTGTCCCTACCACAATCTGTGGCCGCACAGCTGTTGTTCATCAAGACCTGGAAGTGTTAGCTTGAGCAGAGTTGCCTCTTGCCAGATTGGGAACTAGGGCCACAGAGAGGGGAAGTCACTTCCCATGGCAATTCACCTCTCCCCCCCCCCCCCCCCAGACCTTACTTCTGTGGTTCAGTCAGTCAGTGTAATGTTGGACAAAGGGGAGCTAGCCAGGGTGCTGGGGACACAGTCCTGGGCTTTGTTAGCATGGTAGGGCTCAATTGTTATGTTCTCTAGAATGGCCAGGTCAGCACATAGCTTTCAGACATTTCTGCCTGCGGCATAGTAGAAATGCACAGTGCTAAAATTCAAATTAAAAACCATGCCTAAGGTTTCCTTTTATGCTGCCATTTTGGTAGGCTTGGGGTTACTCTCATTATGGGTTCTTACAGAACTCCAGTATTTCTTTGAAAGTATTTTATATAGTCTTATTTTGTAGGGGTTCAAATAAGTACAATTAAAATGGTTTCTCACCAAAAGCATGCTGGGCAAGCACTCTCCCACTGATCTCTCTCCCGCAAACCCCACTAATTTATCTTATAGCAAATCAATTTGCCTCTAAGAGAATCCATTAACAATGACCCCCCCCCCTTTACCTATGACATACTGAAGACAATTTTAAAGTCATGGGCCCAGAACTCTCAGGGGACATAATGTGTTTCATGATAGTTTCTAGAAATCCCTCAACGTTTGGCTATTGATAGTTTAAAATAAATTTATAAGCTTAAATAGCAGGTGACTAAGCCCATTCATGAACACAATCTTGATATTGCTATTTACCAACTTCAGATAAAATAGATAGATTTGGATGATCCCTCCTATTATAGAATAGCTAATTTTGAACATTCCTAATATAAAACTGTTAGCATCACACTATCCTGTCAGCCATCTGGGATCTGCTCTAGGATGGATGGATAGAATTGTGCTTGCAGGTGCTGTAGCATTTTTGTTCACGTTTCATTTAGAGGTTTTTGACTCTGTAACTTTTTATGTTACTGACTTTTCTAAATAGCAGTAATAAAAGCAGTGTAACTGCCTGCAGGTGAGCTCTTGTTTACAGCCACCAGCTAAGTTAGTTATCACAGTCTCGGTGACATTTTCAACAGTCACCCAGGAGGCAGAGGGCTATCTTTTTTTGCAGCGTTGACTAAGGAAAGTTCTTTGTTCAAACTCGAAGAATATCCCTTTGACATCGTCACAATTGCACGCTGTTACTGTGGAGCGTGGTTTAAATAATTTTACTGAGCCGATGGTAGAACTGTAAGCTGACCAGTGTTACTTTAGGACCACAAATCACAGATACAGCCTTCTACACTGTATCTTTTGTGAATATGAAAGTGTAGGTGTAATTAATGTGTGCTCTGCAGGGGAAAAATTGCTTTTAGCGGTTTCATGGCTCTGATCTTTTATTGGCGTACATTTTTTTTTCCCACGATGCAAATTGAAAAGGTCTACAGATGATCTTTGTTCGTGTAAATAGTGCTTAGTGTGGGTTGACACCCAGAGTGTATCATTATGCTGTGTAACAGCACCTGCATTTAAAAACTCATTTTTTTCTGCGACAGTTCATTTATAACGTTTATCTTCCTGAACACTCCACCAACCCCTAGCATGTACATATTTGTTAATGCTTTTTGTGTTCCTGCGATGTCTTTGCTCTTTCATTTCTGGGGATTTTAGACTAACGTTTTGTTTTTCTCCCAG
Seq C2 exon
AGAGGTTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTACATCTGTCTTTGGGACGTCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGTTATGGACGAGACACCACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027560:ENSMUST00000029075:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types