RnoINT0050528 @ rn6
Intron Retention
Gene
ENSRNOG00000013196 | Dok5
Description
docking protein 5 [Source:RGD Symbol;Acc:1562846]
Coordinates
chr3:168438446-168441402:+
Coord C1 exon
chr3:168438446-168438565
Coord A exon
chr3:168438566-168441212
Coord C2 exon
chr3:168441213-168441402
Length
2647 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
ACGTTTTGTTTTTCTCCCAGAGA
3' ss Score
8.99
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAGGTTCTCCAGATAGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAACCTGACTTATTGGCCACTGGGGTGGAACGAGAACAGAGCG
Seq A exon
GTATGTACGCAAAGGTTTCATCTCCCATCTCTCCCCTAAACTGCTTCGCTGCTCCCGTATGATGACTCACGGGGCATCCTCATCCTGTACATTCTGAGCTAGAAAAGTGCACGAAGAAGCTATAATAGCCGTCTGTGTTAACGACGCAGCCGACGTCTCCCTCAAACGTTCTCTAATCTGCAATAGAGAAAAAAAAAGCACCCACATTAATGGTTTCAGTCAGGAGTGCTGAGGACTACAAGGTGTGTCAGCAGAATGGAAGGTGTTTATGAATATTCAACCTATGCCTGGGAGTCCCACTCCATAGGTGGTAGGACTGGTGGTAGGACTTCCCCCATTTTATAGATGGGCTAAACACCTGGTTCCAAATGTAGTAAGTGTGAGTGTTTGAATCCAGGCTATATTAGTAGGTCTCCGTTTACTATGTACAGACTCTAACGTGTGATAATTTCCACCTTGCTTTTTTTCACTTAAAACATGTTTGAACACCGTCCAACATCTTTAATAGACTTTAGCCCCAACCCTGAATATTTCATCAAGTTTAAACTCACTTAAAAACTGTGATTTAAAAGTAAAATCCAACCCCTGAGCCAACTCAGCTCAACACAGCATCTAGGAATAAATCTTTTAAAATAATAACGACCAAAATATTCATGAATGTTTTTAGCAAAAATCAATGTTCATTCATAGTATGAGGCGAGAATAATTGCTTCATCTCCAAATAGCTCAGCCTAGTGGCTGGGGGGAGATTGGATCCCAGGGCTCTGCTTCAAAGCCTGACTTGATCTATGCTCTTGTCAGAGCGGTGGGGGCTCGGGGTCACCCGGGATTGATGGCAGACACAACAGAGGTGGAATTGCACTGGTCGTCTTCGTGCATACTCTAGTTGTTAGTTAAAACCGTGCTCCCTCCCAGCCAGAGATCTGCGTCTTCGTGGCACATTTATAGTCTCTGCCTGCTCTGAGTGTACCTACCACAGTCTGTCACCATGCAACTGTTGTTGACCAAGGCCTGGAAGCGTTAGCTCATACAGAGGAGCCCCTTGTTAGATTGGGAATGGGAGCTGCAGAGAGGGGAAGTCACTTCCCAAGGTGATTCATCCCACCCCAGACCTTTCTTCTGTGGTTCAGTCAGTCACTGTGGTGCTGGACAAAGGGGAGACAGTCAGAGCCGTGGGGACACGGTCTTGGGCTTGGGAAGCACGGCAGGGCTTGGTTGCCATTATTGTCTGGAGTGGCCAGGTCAGCACTTAGCCTTCAGACATCTGTGCCTGTGGCATAGTAGAGATGCCCAGTGCTGACATTCAAATTAAGATCCACGCCTAAGGTTTCCTTTTCCGCAGCCAGCTCTGCAGGCTTGGGGTTTCTTTTATTGTGGGTTCTTACAAAACTCCAGTATTTCCTTGAAAGTATTTTATAGTCTTATTTTGTAGGAGTTCAAATGGGTACAATTAAAATGGTTTCTCTCCAAAAGCATGCTAGGCAAGCACTCTCCCAATGGTCTCTCTGGCCCCAGCCCCACTAATTTATCTTATAGCAAATCAATTGGCCTCTGAGAGAATCCATTAACGATGATTCCCTTTACCTCTTACTTAGTGAAAACAATTTTGTATTCCTGGGTCCAGAACTCTCAAGGGACGTATGTGTCTCATGATAGCTTCTAGGAAGCCCTCAACATTTGGTCTAAAAACTTAGATAGCAGGCACCTGAGCCCATTCTCGAGCACAATCTTGAATTACTTTTCACCGACTTCAGATTAAATGTAGAGATTCCGATGACGATTGTTATTATGGGACAGCTAGTTAGAGCATTCTTATATAAAATCATTAGCATCATACTATCTTGTCAGATGTCAGATGAATGGACGGACAGAATCGTGCTTGCAGGTGCCGTAGTACTTGTGCTCACATTTCATTCAGAGACTTTTTTACTCTGTAGCTTTTTATGTTAATGAATTTCCTGAATAGCAACAATAAAAGCAGTGTAAGCGTGTGCAGGTGACGTCTTGTTTACGATCACCAGCTAAATTAGTTATCACTGTCCTGGTGACACGTTCAACGGTCACCCGGGAAGCAAAGTTCTCTGTTCAAAGTCCAAGTACATCCCTTGACAAATCTTCACAAGCACACGCTGTTACTGTGGACCCGTGGTTTAAATAATTGGGGCACAGCTTTATTGAACTGATCACAGAGCCATAAGCTGACCAGCATTACTTTAGGACCACAAGTCACAGACACAGCCCTCTGCACCTGCACCTTTTGTGAGTACAGAAGTGTAGGTGTAATTAATGTGTACTCGGCAGGGGAAAATTTGCTTTTAGCGGTTTCATGGCTCTGGTCCTTGATTGGCACACAGTTTTTTTTTTCCACGATGCAAATTGAAAAGGTCTACAAATGATCTTCGCTCATGTAAATAGTGTTTAGCGCCTGTTGACGCCCAGAGTGTATCATTCATTACGATGCGTAATAGCACCTGCATTTAAAAACTCATTTTTCCATGACGGTTCATTTATAACTTTTATCTTCCTGAACGCTCCACCAAACCCTAGCATGTACAAAGTTTTTTTTTTAATGCTTTTGTGTTCCTGAGATGTCTTTTTGCTCTTTCATTTCTGGGGATTTTAGACTAACGTTTTGTTTTTCTCCCAG
Seq C2 exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTACATCTGTCTTTGGGACATCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGGTATGGACGTGACACCACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013196:ENSRNOT00000017654:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]