HsaINT0051478 @ hg19
Intron Retention
Gene
ENSG00000101134 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:16173]
Coordinates
chr20:53205226-53208344:+
Coord C1 exon
chr20:53205226-53205345
Coord A exon
chr20:53205346-53208154
Coord C2 exon
chr20:53208155-53208344
Length
2809 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATCTTGAGGCTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGAACACGGATCAATGACATCAGCCTTGGAGAGCCTGACTTACTGGCCACTGGGGTTGAGAGAGAACAGAGTG
Seq A exon
GTATGTAAAGAAAATTCTCTCCTCTCTCTTTCAAAACTGCTTCTGTCTCCATATGATAAAACATAAGACATCTTCATTATGTAAAGTTTTTGGGGTATAAAAATGTATAAAGAAATAAGTAATCTTTTATCTAATCCACAACCTGTGTTAACATTTCAGTGTATTTTTTTCTTATTCTTTTTCCAATTCATAACATGAATGTATCTACATTAATAATATCAGTTAGAAATTTTGGGGAACCTGCTATGTGCCAGTTTGGTGGAAGATGCTTAACTCATCTCAGATTATTTATTGTACTTTTCATAGCAGCCCTATGGTGTAGGTATAATTACTTCCTACGTTTTGCAGATGAGGAAACTAAAATTTAGAGGACGTAAAGACTTTCCTTCAATTCTGTTAGCTCACTAGTGTTTGATTCTAGACGATACCGTTGGACCTATATTACAGTTTACAGATTTTAAAATGTCATGGGCATTTTTTGGTCATGCCTTTTTCACTTAAAATGTTATCAACAACTTTCCAATGTTTTCAATATAATTCAAACTTTATGACTATTTCACCAAATTTAAACCCATCTAAAATCTGTAATTAAAAAAATACATATTTTATTGAAACACTTGAGCCAACTCTGAGCTCAGCAGTCAATCTGGGAATCAATAATTTAAAATAATAATGACTAAAATATTCATGAACACTTCAGCAAAAATCAGTGTTGATTTACAGAACAAACCTGGATGTGAGGAATCATTCCTTTGTCTCCTAACAGCTGAGCCTGGGGACGGGGTAGATCAGATCACAGAGTTCTGCTGTAGGCTGACTTGATCTATGAGGGCATGTCACCATGGAAAGGTCTGTGGGTCATCTGGTTTGATTACGGACATGGCAGAGATGGAATTGTACTGACTTTTTCTGTAGGTGCACACTCCAATGTTAGTAAAAAAAATGCTGTCCCTCCCAATTGGAACTATGTCTTCATGACACATTTACAATCTGTGACTCTTTGGATGCACCATATCTGCCATAACCCATCTCCATGGAAATGTTATTGACCGAGACCTAGAAGCCCTGGGTAATTCAGAGGAGCCTCTTTGTAGATTGGAAAATTGAGCTACAGAGAGGTTAAGTCATTGACGGGGTTACACAACCAATCCCCAGGCTCCTCCTTCTCTGGTTCACTAAATCAGGACACCCCAGGCAGAGAGGATACCTAGGAGCCAAGCATAAAGAAAACCTGGCAGGTTTTGATTATGATTCATTTTTTCACCTAGAGTGCTCAGATCAGCACTTTTCACAAATTTGTATTTGGGGAAGCAGTATCCTGACAGCACCACAATCTGAATTTAAAAATTGGCGGTGCGTAGGAGATACCTTTCCCACAGCAGCTTTCTGTGCCTCAGTTTCCTCTTCTGTTAAATGGAAATAATAGCTCTGGTCTACAAGTATCAGGGATTATTATAAATTCAACTGTGTCCTCTCAGGCCCTTTCCAATGTTAATTAGTATGACTTCAAATGATTGTAATTAAAATGGTCACTCCACCATTATTGCTATTACTCTTTTTAAATTTTTATTATTATTTTTTCCCTATCTCTCCCCTATTGTTATTCTTGAGTGAGGTAGGACTCAGAGAACTTCTAAGCAAATAGATTGATAATGATCTCTCTTACTTTTTACTTAATATAGACAGTCTTTCTTACTTGGAACTTTCAAGGGGGGGGAATATGCTCAATTAGAATACATTTTTAAATATGATTACTAGAAATCAACAAATATTTGTTTATTGAGAATATGAAATAATTAAAAATTTTTGAATAGTAGATCGCGGAACACATTTCATGAACACTATCTCAGCATTACTATTTACTAAATTCAACTAAAATCTATGAAAATTCAAATGACTATCTTATCATAAAACAATGTATTTAGAATACCACTAATATAAAATTGTTAATGCCACATTGTCGTATGTAGGCAATCTACCATAATGATGCATAGGTGGAAATATGTTTGCTATAGTAATATTTTTGTTCATTTTTCACTGAAAGACTTTGACTCAAAAACTTCTTAATGAATTTTCCAGAAATATAACAGAAATATGGTGACTGTATCTGCAGGGATGAAAATTAGGTTAATCAGCCAAGCAGTTTATGTAGAATAATTTTGGTTGCATTTTAGCAATCATCCAAATATGCAATGAATATTTCTTTCCACTATTTGGCTAAAGGAAGTTCTTTGTTGAAACTAGTTCAAATATATGCATTGGCATTTTCCCAAATTGTTGGCCAGTTAAGTGCATAGTATTACTGTGGCATTTTGTTTAAATGATTGAAATACAGTTTTATTCATTTAGTTATAGAAATTACAAGTTGATCAATATAACTTTAATAACATGGAACCATGACATAATTGTTTTGCACCTGCATCTTTTGTGAGCACAAAAGTGTGGATCTAGTTAATGTGTTCTTGGCAGGAAAAAAAAATTGCTTTTAATGGTTGTATTGCTTTAGTCTTTTATTGGCATATACATTTTTATTATGCAAATTTAAAAATTCTAAAAATGGTCTTCGCTCATGTAAATAGTGCTTAGTGTATGTTGACAGGCTGTATCATTATTATGTTATTTAATAGGATCTGCATTTAAGAAATTATTTTCTGGGACTGTTAATTAATAGGAAAGGTTTATCTTTCTGAATATGCAACCGAAATCTAGAATGTGAACTTGAATTGTTTTTAAATGCCTCTATGTTCCTACAATGTCTTTGATGTTTTATTCCTGGGGATTTTAGACTAACCTTTTGTTTTTCTCCCAG
Seq C2 exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTATATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101134-DOK5:NM_018431:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)