GgaINT0012756 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15237721-15238229:-
Coord C1 exon
chr14:15238149-15238229
Coord A exon
chr14:15237823-15238148
Coord C2 exon
chr14:15237721-15237822
Length
326 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
TTCTATGATTCTTCCTGTAGATC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTAACAATATGTGCCAATATGAAAGGAATGAAAATTAAACCTGGTTCCTTGGGAAAAGCTGTTCCACCTTATGATGTGCGG
Seq A exon
GTATGTTGATACACTACATCTCAGCTCAGCTGTATTTGGGGCACACGCATTAGGAAAATGCTGACTGGCCCCCATGTGTCATTTGCTTGTTACATCACGAATATTTCCCTAAGTTAATCAAAGCAGTAATGATACGTCTCTTTGGGCACTGGTAGTTGGGCAGTGGAATAGGTGTCCCAGGGCAGTGGTCATGGCCCCAGGATGCCCAAGTTCAAGAAGCGTTTGGACGACACTCTCAGACATTGTGAGCCAGTGGTTGGACTTGATGATCCTTGGAGGTCTCCTACAACTCAGAGTATTCTGTGATTCTATGATTCTTCCTGTAG
Seq C2 exon
ATCATAGATGACCATGGGGCTGTTCTGCCTGAAGGAGAAGAAGGCAACATTGCTATCCAAGTTAAACCTTCACGACCCTTCTGCATGTTCTCTGAGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACAATATGTGCCAATATGAAAGG
R:
AAGTACTCAGAGAACATGCAGAAGG
Band lengths:
182-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]