MmuINT0010295 @ mm10
Intron Retention
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119538085-119538389:+
Coord C1 exon
chr7:119538085-119538165
Coord A exon
chr7:119538166-119538287
Coord C2 exon
chr7:119538288-119538389
Length
122 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCTATGACCCCCCCTTTCAGATT
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTGTCATCTGTGGCAATTCAAGAAACTCGACAATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
Seq A exon
GTAGGCAGCCCCTGCTGACAGTGCACAGAGCAATTTATGTTCTGGGGGATACAGGGTGGGCTTTTGGGTACCGTCACTGTGTAAAGGATGCTCAGATGTCATGCTATGACCCCCCCTTTCAG
Seq C2 exon
ATTGTAGATGAGGAGGGCAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCTGTCCGAATCAAGCCTACTAGACCCTTCTGTTTCTTCAACTGCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972:ENSMUST00000066465:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATCTGTGGCAATTCAAGA
R:
TAGCAGTTGAAGAAACAGAAGGGT
Band lengths:
178-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types