HsaINT1002683 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20430993-20431321:+
Coord C1 exon
chr16:20430993-20431073
Coord A exon
chr16:20431074-20431219
Coord C2 exon
chr16:20431220-20431321
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TGTGATGATTTCCTTACCAGATT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTTGTCATCTGTGCCAATCCAAAAGGCATGAAAATCAAGTCTGGATCCATGGGGAAGGCGTCCCCACCCTACGATGTGCAG
Seq A exon
GTAGCAGCCTCCCCCAACTTCTGGCAAGGCCTGGCATGGAGAGGAGAAAGACACACAGGCCTGGTTGGCACGGGCTGCTGGGCTGCTGGGAGAGGCCCAGGGTGTAGACACTCACGTATGCACCTCTGTGATGATTTCCTTACCAG
Seq C2 exon
ATTGTGGATGATGAGGGCAACGTCCTGCCTCCTGGAGAAGAGGGGAATGTTGCCGTCCGTATCAGACCCACTCGGCCCTTCTGTTTCTTCAATTGCTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCATCTGTGCCAATCCA
R:
AGCAATTGAAGAAACAGAAGGGC
Band lengths:
178-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains