GgaINT0013877 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15699710-15701099:-
Coord C1 exon
chr14:15700895-15701099
Coord A exon
chr14:15699848-15700894
Coord C2 exon
chr14:15699710-15699847
Length
1047 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTTTTTTCTCTACGTGCAGGAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTTACTCAGGTGGTTCGAAGCAGCCTTGTTAATATTGGCAAAGCCATCAAGGGCCAAGTGTTGATGTCGGCTGAACTTGAAGATGTTTTCAACAGCATGTTAATGGGAAAAGTGCCATCAATGTGGGCTGTCAAGTCCTATCCGTCCCTGAAGCCCCTGGGGAGCTACGTGTCCGATCTGCTTTGTCGTTTGGGCTTCTTCCAG
Seq A exon
GTATGCTGAGCTGAGACCAACAGGTTAAGGATGGGCTGGTTGGAAGGTGAGCGGGTGAAATGTCTGTTGGTGCTGTCCTCATTCCGCAGCACCTGAGAGGCTCTGGGTTGGGAACTGCTGTGCCCTGCATTAATAGCACTGCTCTGCAGGGTGACTCCAGGAGTACATCCGTAGTGCCACTCCAGTGCAGCATTTACTAGTTTTCATTTTCTTTCTTCTAGAAAATGTGTTTTACTTTGCATCAGTGCCTTAATGACTGTCTTGCTCAAAGGGCACTGAGCAGGAATAAGAAGAGTTACAAACAGTCCCACAGGACATAGCAGACACTGTTTCGTGTGTGACTGTAATTCCCTTTCAAGTCCAGTAAGCAGTGGCACCACTTCCACATGCTTTTTGAACAAACTATTTGATTCTGTACTCGGTCTTCTGTTATTTTCCTCACGTCCTTAGCACACTGTTTACATTACTTAAACTTTCAGCTATACCTTAAATAGCTGAAATAGTGAGATGTAGCAGAATTCATACAGGTCAAAGGAGGAGAAAACTAAACAGAAGGGTGGAAGATTTGTATGAAGCAGCAGAATTTCGCGTTTGCTGCACTAAAGTGCCATGTATTTTGCCTCCAAATGGCTTGGAGCAGTGTGTGTATCTCCTATCCTTGCCTTGTTTCTCCTGCTGCCTTTCTGGTTTCCAAAGCAGACACTGGCGTCTTTGTGCAGGAGTTATTTTCTCTGTTGGGTTTTTATATGTTGTCGGTAGTGATACACTGTCCTTACAGTGACAGGAAAAGATACCATGTGAGATAATCTGTTTTTTTTTTTTTTTCATGTTAGGAAATTGGGGTTTAGAAGACTGTAGAATAAGGAATATTGAAAAAAGAAAAAAGACTATATAATGAGTGGCAATATTCAGAGGGTCCAGTCAAGGGTTGGGTCTTATTGTAGTGTTTGACTGCATCTGTGAAACTGTCTCCTCCTGCTGAATTTGCACAGCAAAGCCACAAAGTGTATTTTTTCCTTCTGTTTTCTTTTTTTTCTCTACGTGCAG
Seq C2 exon
GATTGGGTCATCAATGGGCCACCCACTGTCTTTTGGCTGTCAGGATTCTACTTCACTCAGTCTTTTTTGACAGGTGTTTTACAAAACTATGCCAGAAAATACACCATCCCCATTGACCGCATCGGATTTGAATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTCAGGTGGTTCGAAGC
R:
GATGCGGTCAATGGGGATGG
Band lengths:
328-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]