DreINT0009327 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39619389-39620585:+
Coord C1 exon
chr24:39619389-39619593
Coord A exon
chr24:39619594-39620447
Coord C2 exon
chr24:39620448-39620585
Length
854 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TATGTGTGTGTTGGCTTTAGGAC
3' ss Score
10.46
Exon sequences
Seq C1 exon
GCTGTCCAAAGTGGTGCGTAGCAGCTTGCTAAACACCCAGAAGGCACTTCGGGGACAGGTTGTGATGTCATCTGAGCTGGAAAACGTCTTCAACAGTCTTCTTGTTGGTAAAGTGCCAGCCATGTGGGCTGCAAAGTCCTACCCTTCCCTCAAACCCCTCGGCAGCTACGTGTCCGACTTCCTGGCCAGACTGCAGTTTCTACAG
Seq A exon
GTGAACGAGCATCAGCAGCTGAATACAAATGCATAAGACTAAACAGATGATCAGAGACCTTTAATGTTTGTGACCAGCTGGTGCATGTAGTCTCAGTGTCATTTCAGTAGCATTATCTTGTTCATAATATTGGGGTTATAAAATGAATATAGCAATAATGGTTTATTCTGCAATTAATAATGGCATTAAAGGTCCTGTGAAGTGCTTTGAAATATGCAGTTTTATTCGATGTTCAACGTAATCTCAACCAAAACACGAAGAGAGGGTGGGACATAGTGTGGCTCCTCCTCTTTTTGAAAACAGCCAATAGCATATAGTTTGATCACAGCTCTGCCAGTAATAGTGGTTGAGCTCAAGCGCATCGAATGAAAAGCAAATGAAAAGCAAATGAAAAGCGTCTTGAAGGGGGCGGGGCATGTCAGACACTAGATAGCATTTGATTGGTTATGAGGCAATGTGAATAAAAGCATTGATCCATTTAGGCGGAAGTGACAAACTACAAGCTTTACATGTTTATATCAGTTTTATATCTTCTAAATGCAAATGTCGTCACTGTTTTGGAGCACACTAGCTCATAGATATCTCAAAAACGAACAATACTGACACTAACATCTAAAAAACTTCATTTTATTTTATGGGACCTTTATTAATGTGGCAGAAAGTATGTTTTTAAACATGCAGAGCAACACACTTTTGTCTTTTAGCATGTGTTAGGTGTTGTGAGGACTCTATGTCCGCCTTTACAATATATTATTATTAGTTGTTGTTGACTAACTAGGACAATATTCTTATTTGTGTTGTTTTATTTGTGTTTTCTAATTTTTCGGACATCTTTATGTGTGTGTTGGCTTTAG
Seq C2 exon
GACTGGATTGATAACGGCCCTCCGTCAGTGTTCTGGGTGTCAGCATTTTATTTCACTCAGTCGTTCCTTACTGGTGTGTCGCAGAATTTCGCTCGCAAATACACCATTCCCATTGACTACATCGGCTTCGAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCAAAGTGGTGCGTAG
R:
TCAAACTCGAAGCCGATGTAGT
Band lengths:
342-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]