GgaINT1011551 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14983833-14985221:-
Coord C1 exon
chr14:14985017-14985221
Coord A exon
chr14:14983971-14985016
Coord C2 exon
chr14:14983833-14983970
Length
1046 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTTTTTTCTCTACGTGCAGGAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTTACTCAGGTGGTTCGAAGCAGCCTTGTTAATATTGGCAAAGCCATCAAGGGCCAAGTGTTGATGTCGGCTGAACTTGAAGATGTTTTCAACAGCATGTTAATGGGAAAAGTGCCATCAATGTGGGCTGTCAAGTCCTATCCGTCCCTGAAGCCCCTGGGGAGCTACGTGTCCGATCTGCTTTGTCGTTTGGGCTTCTTCCAG
Seq A exon
GTATGCTGAGCTGAGACCAACAGGTTAAGGATGGGCTGGTTGGAAGGTGAGCGGGTGAAATGTCTGTTGGTGCTGTCCTCATTCCGCAGCACCTGAGAGGCTCTGGGTTGGGAACTGCTGTGCCCTGCATTAATAGCACTGCTCTGCAGGGTGACTCCAGGAGTACATCCGTAGTGCCACTCCAGTGCAGCATTTACTAGTTTTCATTTTCTTTCTTCTAGAAAATGTGTTTTACTTTGCATCAGTGCCTTAATGACTGTCTTGCTCAAAGGGCACTGAGCAGGAATAAGAAGAGTTACAAACAGTCCCACAGGACATAGCAGACACTGTTTCGTGTGTGACTGTAATTCCCTTTCAAGTCCAGTAAGCAGTGGCACCACTTCCACATGCTTTTGAACAAACTATTTGATTCTGTACTCGGTCTTCTGTTATTTTCCTCACGTCCTTAGCACACTGTTTACATTACTTAAACTTTCAGCTATACCTTAAATAGCTGAAATAGTGAGATGTAGCAGAATTCATACAGGTCAAAGGAGGAGAAAACTAAACAGAAGGGTGGAAGATTTGTATGAAGCAGCAGAATTTCGCGTTTGCTGCACTAAAGTGCCATGTATTTTGCCTCCAAATGGCTTGGAGCAGTGTGTGTATCTCCTATCCTTGCCTTGTTTCTCCTGCTGCCTTTCTGGTTTCCAAAGCAGACACTGGCGTCTTTGTGCAGGAGTTATTTTCTCTGTTGGGTTTTTATATGTTGTCGGTAGTGATACACTGTCCTTACAGTGACAGGAAAAGATACCATGTGAGATAATCTGTTTTTTTTTTTTTTTCATGTTAGGAAATTGGGGTTTAGAAGACTGTAGAATAAGGAATATTGAAAAAAGAAAAAAGACTATATAATGAGTGGCAATATTCAGAGGGTCCAGTCAAGGGTTGGGTCTTATTGTAGTGTTTGACTGCATCTGTGAAACTGTCTCCTCCTGCTGAATTTGCACAGCAAAGCCACAAAGTGTATTTTTTCCTTCTGTTTTCTTTTTTTTCTCTACGTGCAG
Seq C2 exon
GATTGGGTCATCAATGGGCCACCCACTGTCTTTTGGCTGTCAGGATTCTACTTCACTCAGTCTTTTTTGACAGGTGTTTTACAAAACTATGCCAGAAAATACACCATCCCCATTGACCGCATCGGATTTGAATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTCAGGTGGTTCGAAGC
R:
GATGCGGTCAATGGGGATGG
Band lengths:
328-1374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]