HsaINT1011484 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20935348-20936853:-
Coord C1 exon
chr16:20936649-20936853
Coord A exon
chr16:20935486-20936648
Coord C2 exon
chr16:20935348-20935485
Length
1163 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGATTTCTGTGGCTCTCCAGGAA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GCTGACCAAAGTGGTTCGGAGGAGCCTCATCAATCTTGGCCGAGCCATCAAAGGACAGGTCCTGATGTCCTCGGAGCTAGAGGAAGTCTTTAACAGCATGCTTGTGGGTAAAGTGCCAGCCATGTGGGCAGCCAAGTCTTACCCATCACTGAAGCCTCTGGGGGGCTACGTGGCTGACCTGCTGGCCCGCCTGACCTTCTTCCAG
Seq A exon
GTACCTGGGAGTCAGGGGTAACCGGGAACCTGGCATGCTTGCTTAGGTGGAGAGGACATTCTGAAATGGCAGACTAGAGGCAGGGGGAGGAGGGCAGGCAGCCACAGAACATCCTGGATTGAGCCTCTGGAAACAGTCTTCCTGGAGTTAGAAGCAGGAGGGAGACTTGAAAGTCCTGGAAAAGATTATAGCCGGCCGGGCGCAGTGGCTCACATCTGTATTGCCAGCACTCTGGGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGACACCAGCCTGGCCAGCATGGTGAAACCCCGTCTCTACTAAAAATACCAAAAAAATCAGCAGGGCATAGTGGCTTATGCCTGTAGTCTCAGCTACCTGGGAGGCTGAGGCAGGAAAATGGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCATTTCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTAAAAAGAAAAAAAATGTCACAAACTGGTGGCTCATGAGATAGATTTGGACAATAATTATGTTTGGTTTGGCTACCTGGTAATTTAAACATTTTTGAGCCAGCATGTAAACATTGATTTTTTACATATAAAAATCCGATGTTTGTACTGCAAAAAATAGAAGACCTGAAACAATGCACCTGCGTTCTCGCATGGCATGGCGACTATTGCTGGAGATGAGTGGCAGCTGCTCAGTTTAGACAAGGTACATATTCTCCACTGCTACAGTCCCCACCACTCTCTGTTGTATCCCTGATATCAGCTTGCACCTGGGCTTTTTTTTTTTTTTTTGAGATGAAGTTTCACTCTTGTCACTCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCAAGCAGCTGGGACTGCAGGTGCCCACCACCACGCCTGGCTAATTTTTGTAGTACCTAGGCGTTTCTTAAAGTGTAAATATATTTCTTTGTACCCTTATTTCAAAAGTGGGAAGATAGAAGCTAAACCAAGAGGGCTGTTTCAAGAAAAATATGAAAAAACATATTTTATATGGTACTCGTTACATTACTTGCATTTGAACTATCTTTGATGTGTTGTTGATTTTGAATCTTGATTTCTGTGGCTCTCCAG
Seq C2 exon
GAATGGATTGACAAGGGGCCCCCTGTGGTATTTTGGATCTCTGGATTCTACTTCACACAGTCTTTTTTGACTGGCGTCTCTCAAAATTATGCCCGGAAATATACCATCCCCATTGACCACATTGGATTTGAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(17.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTGGTTCGGAGGAGC
R:
AACTCAAATCCAATGTGGTCAATGG
Band lengths:
334-1497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains