BtaINT0050541 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18845239-18846585:-
Coord C1 exon
chr25:18846381-18846585
Coord A exon
chr25:18845377-18846380
Coord C2 exon
chr25:18845239-18845376
Length
1004 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TTATCTCTGTGGTTCTCTAGGAA
3' ss Score
10.53
Exon sequences
Seq C1 exon
ATTGACAGAAGTGGTTCACAGAAGCCTCATCGATCTTGGCCGAGCAATTAAAGGGCAGGTTCTGATGTCCTCAGAGCTGGAGGATGTCTTCAGTAGCATGCTTGTGGGTAAAGTGCCAGCCATGTGGATGGCAAAGTCCTACCCATCACTGAAGCCCCTGGGAGGCTATGTGGCTGACCTGCTAGCCCGCCTGGCCTTCTTCCAG
Seq A exon
GTACCTCGGAGTCAGGGTAACTGGGCACCTGGGATTCTCATTCAGGTGGAGAGGACATTCTGAAATGACAAGTTAAAGCTGGAAGGGGATAGGGTAGCCACAGAGCATCCTGGATTGAGCACCTACTGGAAACCCTTACTAGGGTTGAGGACAGGAGGGAGATTTTCAAAGTCCTTGAAAAGTTTATAGCCTATAAAGGCAGGAATAGGAATGAGAATAAATGCCACAAACCAGTGTGTCATGGGCTACATACAGCTCATGGGCTAATAGATAGATTTCATTTGGCTCTCTGGTAATTTAAAAATCTGAGGGCTTCCTTGGTGGCTCAGTGGTAAAGAATCTGCCTGTCAATGAAGGAGACAGTGGATCGATCCCTGATCCAGGAAGATCCCACATGCAGTTGGAGCAACTAAACCCATTCACCACAACTGCTGAGCCTGGGCTCTAGAGCCTGGGAGCCACAACTGTTGACCCCATGTGCCACAACTACTGAAGCCCAAGCACCCTAGAGCCTGTGCTCCTCAACTAGAGAGTAGCACCTGCTTGCTGCAACTAGAGGAAAGTTTGTGCAGCAATGAAAATAAATACAATTTTTAAAATATTAAAAAAATTAAACTTTGAGCTAGCATATAAGGATTATTACATATAAAAATACAGATGTTTTTCTTGCAAAAAAAGGAAGACCTGAATCAATGGACCTGCATACCTGCATGGCAACTACTGCTGGAATTGAGTAGCTGTTGCTTAGACAAGACATATATTCTCTACTGCTATAGTCCCTCCCACTCTCTGCTGCATCCCTGACACCAGCTTGCACCAGTGCTTTTTACTTCAAATTGGGAAAATATAAGATAAAGGAAAATATAAGATAAGACTACAAAGTCTGCCTGTTTCCAGAAAAATGAGAAAAAGCTTATTTCTTTATGAGACTCATTTTTATTCTTGCCTTTGAACTATCTTTGATGTATTACTGATTTTGCATTTTTATCTCTGTGGTTCTCTAG
Seq C2 exon
GAATGGATTGACAATGGACCTCCTGTGGTCTTTTGGATCTCTGGATTCTACTTTACACAGTCTTTTTTGACAGGTGTCTCTCAGAATTATGCTCGGAAATACACCATCCCCATTGACCACATTGGATTTGAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAGAAGTGGTTCACAGAAGC
R:
CTCAAACTCAAATCCAATGTGGTCA
Band lengths:
342-1346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]