GgaINT0015062 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7643198-7643649:-
Coord C1 exon
chr14:7643456-7643649
Coord A exon
chr14:7643320-7643455
Coord C2 exon
chr14:7643198-7643319
Length
136 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
ACTTTTTGTTTCCTTTTCAGGCT
3' ss Score
11.82
Exon sequences
Seq C1 exon
TGGATCGTATTGTTGGTCTAGACCAGATGGCCAAGATGACTGAAAGTTCACTGCCTAGCGCTTCAAAAACCAAAAAAGGCATGTTCCGTACTGTGGGCCAACTCTATAAGGAGCAGCTGACCAAACTGATGACCACCTTAAGGAATACCAATCCCAACTTTGTCCGCTGCATCATTCCAAATCATGAAAAAAGG
Seq A exon
GTAAATATCAAATGATTGATTTTCAGACTCTTGGCACTCTATTCATGCTGTTCAGATGTCTTCAAACATAGATATGTGCTAGTAACATCTTTGCAAATTTCTACTGTGTTAAAAATACTTTTTGTTTCCTTTTCAG
Seq C2 exon
GCTGGCAAACTTGATGCCCATTTAGTGCTGGAGCAGTTGCGCTGCAATGGTGTCTTGGAAGGTATTCGTATCTGTCGGCAAGGGTTCCCCAACAGGATTGTCTTCCAGGAATTCCGTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGTTCACTGCCTAGCGC
R:
GGAACCCTTGCCGACAGATAC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]