BtaINT0097126 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14252111-14254073:-
Coord C1 exon
chr25:14253880-14254073
Coord A exon
chr25:14252233-14253879
Coord C2 exon
chr25:14252111-14252232
Length
1647 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CGCCCTTTGCATCTTTGCAGTCG
3' ss Score
8.85
Exon sequences
Seq C1 exon
TGGACCGCATCGTGGGGCTGGACCAGATGGCCAAGATGACGGAGAGCTCGCTGCCCAGCGCCTCCAAGACCAAGAAGGGCATGTTCCGCACAGTGGGGCAGCTGTACAAGGAGCAGCTGGGGAAGCTGATGACCACACTGCGGAACACCACACCCAACTTCGTGCGCTGCATCATCCCCAACCATGAGAAGAGG
Seq A exon
GTGAGGCCGCCGCCCGCCTCCTCGGGACGTCCTCAGGGTCTGCAGGGAAAGGGGATGCAGGCTGGGCTACAGGGGCAGGAGGAAAGCCAGACCCCCCACCCTGAGGGCTCCATCTGACGCAAGTGGGAGGCACTCCTTTCTCATCCAAGAGGGAGAAGAAGGCAAGAGAGGAAGGGAGAATGCTCCCGGGGACTTTGAGCCCCGGAGTGGCTGCACATGGTATCAGATCACTCGTTCACTAATATTTACTGTAATATTTACAGTGAACATTATTCAGCTAATATTTGCCGAGCTCCTCCTGTGCCAGGTGCTGGGGATTCGGAGCTGGATAGACTGTAGTCCTTGCTGGCAGGTGTCATAATCTAGGCCAGGGGTGCTTAGCTGGGGGGCAATTATGTGCCCTCCCTTCCCGCACTGGGGAGATTTGGCCGTGTCTGAAGGCAGTGGCAACCCACTCCACTGGAAAATCCTACTCTTGCCTGGAAAATCCCTTGGACGGAGGAGCCTGGTGGGCTGCAATCCATGGGGTCACTATGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCCCTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACAACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGAAGACATTGTTAACTGAAAGGGGGGCTATAATTGGCATCCAGCGCACAGAAGCCAGGGATGCTGCTAAACATCCCGTAGCACACAGAGCCGCTCCCCCTGCAACCACAGAGAATTATCCAGCCCAAGACGTCCGTAGTGCTGAGTTGTGGGAGATGGGGACACACCAGCTGAGGAGGTCATGTGGTAAATTACGAGAATACCAAAGAGCCAGGGGTCCCACTCAAAACTCAGGGCTCAGAGAAAGCTTCTTAAAGGATGTGAACTCGGTGACTCAGAGGGCAGGGTCGGGAGGGCATCCTAGGCAGAGGGAACAGAATAAGCAAAGACGTGGAGGTGAGACGTGGAGGTGAAGGTCTGGGTGAAGAAACTCCAGGTGGGTTGTTCCGTATTGACGTGTGATGGTGTGAGGCAGGGATGAGGGAGATGAGGCTGGAATGCTGGGCAGGGCTTAGATTGTGGCATTCCTGGGGTTAACAGGGCTTGGCACTCCTTCTGTAAGATGTTATCAGGGGACGTGCCATGATCAGATTTGCATTTTAGAAACCAACTGAGGCAATGGGAGAGCCAGGACAGGGTGGGAAGACAGTACAAGGCTACTGTGGCCATCAGGGCAGGAGAAGAGGGTGGCAAGTGGATGGCAGTGGTGAGAGAAGTGGGTGGATGGGGAGATGTTTGGGAGGTCGGAGCCATAGAACTGGCGATGGGCAGGAAGCGAGGGAGGGGGAGGTGACAGGGAGGAAGCCTCAGGTGATGCTAGTGCCAACAAGAATGAGACACGGCACCAGACCCTCAGCTGAGCTCTCACCTGGTGCCCCCAGTGATCCTCCCCATGGCCTGGCGAGGTGGGGCACTGGGCCTGAGATTCGGGGCTTGCTGCTCCCTGAGGCCCCGGCAGCCCACCGCCCTTTGCATCTTTGCAG
Seq C2 exon
TCGGGCAAGCTGGACGCCTTCCTGGTTCTAGAGCAGCTGCGGTGCAACGGGGTCTTGGAAGGCATCCGAATCTGCCGCCAGGGCTTCCCCAACAGGATCGTCTTCCAGGAGTTCCGCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCTGGACCAGATGG
R:
GTTGGCGGAACTCCTGGAAG
Band lengths:
303-1950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]