GgaINT1018538 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7576684-7577135:-
Coord C1 exon
chr14:7576942-7577135
Coord A exon
chr14:7576806-7576941
Coord C2 exon
chr14:7576684-7576805
Length
136 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
ACTTTTTGTTTCCTTTTCAGGCT
3' ss Score
11.82
Exon sequences
Seq C1 exon
TGGATCGTATTGTTGGTCTAGACCAGATGGCCAAGATGACTGAAAGTTCACTGCCTAGCGCTTCAAAAACCAAAAAAGGCATGTTCCGTACTGTGGGCCAACTCTATAAGGAGCAGCTGACCAAACTGATGACCACCTTAAGGAATACCAATCCCAACTTTGTCCGCTGCATCATTCCAAATCATGAAAAAAGG
Seq A exon
GTAAATATCAAATGATTGATTTTCAGACTCTTGGCACTCTATTCATGCTGTTCAGATGTCTTCAAACATAGATATGTGCTAGTAACATCTTTGCAAATTTCTACTGCGTTAAAAATACTTTTTGTTTCCTTTTCAG
Seq C2 exon
GCTGGCAAACTTGATGCCCATTTAGTGCTGGAGCAGTTGCGCTGCAATGGTGTCTTGGAAGGTATTCGTATCTGCCGGCAAGGGTTCCCCAACAGGATTGTCTTCCAGGAATTCCGTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCACTGCCTAGCGCTTC
R:
TGGAAGACAATCCTGTTGGGG
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]