GgaINT0015075 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7634053-7634411:-
Coord C1 exon
chr14:7634307-7634411
Coord A exon
chr14:7634206-7634306
Coord C2 exon
chr14:7634053-7634205
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GGTTGATATGATTACTGTAGGAG
3' ss Score
2.83
Exon sequences
Seq C1 exon
ATTGAGGTCGAAAATGTTACCAGTTTGCTCAACGAAGCAGAAAGCAAGAATATCAAATTAACTAAAGATGTGGCAACCTTAGGATCTCAGCTACAAGACACACAG
Seq A exon
GTAAACTTGTATCTAGTAACAGCTCACCTACTATTTTAAGAAACACACTATCAGAAGACCTCCGCTAATGACTGTCTTGCTGGTTGATATGATTACTGTAG
Seq C2 exon
GAGCTGCTTCAGGAAGAAACACGGCAGAAGTTGAATGTGACTACAAAGCTTCGTCAGTTAGAGGATGATAAGAACAGCTTGCAGGAGCAGTTGGATGAAGAAGTAGAAGCAAAACAAAATCTGGAGAGACATATTTCTACACTGACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.686
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100),PF045827=Reo_sigmaC=PU(32.1=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGAAAATGTTACCAGTTTGCT
R:
TGTCAGTGTAGAAATATGTCTCTCCA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]