RnoINT0096363 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:844880-845227:+
Coord C1 exon
chr10:844880-844984
Coord A exon
chr10:844985-845074
Coord C2 exon
chr10:845075-845227
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ACGTGTGCTCTCTCTTGTAGGAG
3' ss Score
11.97
Exon sequences
Seq C1 exon
AATGAAGTGGAGAGTGTCACAGGCATGCTCAATGAGGCAGAAGGCAAGGCCATTAAACTGGCCAAGGAAGTGGCTTCCCTTGGATCTCAACTTCAGGACACCCAA
Seq A exon
GTGAGTATTGCGCTGCACCATCTGGTAGACCTGGAGTGCCCCCATCCTTGGGAGCATCCCTGGGACCACCACGTGTGCTCTCTCTTGTAG
Seq C2 exon
GAGCTGCTTCAAGAAGAAACCCGGCAGAAGCTCAATGTGTCCACCAAGCTGCGCCAGTTGGAAGATGAGAGGAACAGCCTGCAGGACCAGCTGGATGAGGAGATGGAAGCTAAGCAAAACCTTGAGCGCCATGTCTCCACCTTGAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100),PF045827=Reo_sigmaC=FE(24.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.8=100),PF045827=Reo_sigmaC=PD(5.8=15.7),PF045827=Reo_sigmaC=PU(32.1=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTGTCACAGGCATGCTC
R:
TGCAGGCTGTTCCTCTCATCT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]