GgaINT0016196 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2263184-2263614:-
Coord C1 exon
chr14:2263447-2263614
Coord A exon
chr14:2263326-2263446
Coord C2 exon
chr14:2263184-2263325
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAAGAGGTA
5' ss Score
-17.83
3' ss Seq
TTCTGTTTATTTCCCGACAGGAG
3' ss Score
9.58
Exon sequences
Seq C1 exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAA
Seq A exon
GAGGTATTTCAGCACTACAGTGATCACTGATGTGGCATCTTGTGCAGAGCCGCCCCACATTGCCGTATGTTCTGTCTTCCCATGCTGACAGCACTGCCTTTTTCTGTTTATTTCCCGACAG
Seq C2 exon
GAGGATAATAAAAGCAATACCCTCTTTCATGATGCAAATGTGTTGGCCTCTGCACTTGACTTGCTCATGGCTGGCACTGAAACAACGTCCACCACCCTGCAGTGGGCCGTCCTGCTGATGATGAAGTACCCCGAGATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGAAGAGGTGTGTGTGATCC
R:
CTCGGGGTACTTCATCATCAGC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]