GgaINT0019452 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3044799-3046446:+
Coord C1 exon
chr12:3044799-3045048
Coord A exon
chr12:3045049-3046288
Coord C2 exon
chr12:3046289-3046446
Length
1240 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GTTTCCATGTCTTGTAACAGAGT
3' ss Score
6.53
Exon sequences
Seq C1 exon
GAAGAGCTCCATTGCTGCCATGTCAGTACTGGGTGCCACGCATTTACCTGCTGTTTCTGGCTGAAGATCCTCGGGTGTTTGCACAGAGAATAGTTTCTGCCAACATCCTACGTAAAAAGACACAGATGCTGCTACTCTATCACCTGTATGTGGACTGCATGCCCACAGATGGACTAAATAGCATTAGTGAGACAAGCCTGGAGAAAATGAAGCTGTGGGCTCTGCATACACCCAAGATGAAGAAGAACAG
Seq A exon
GTAAAATATCAAGTACCTGTCTTGTGTCTCAGCCTTTAGCCAATTAACACTGTAGGATTTCATAGATTTATGGAACGAGTGGCAGTTGAGGCAGATCTAGAGCATCCAGCTCAGTCCATGGATTTCACCTGGTTTCCAGCATGTGCAAACCACTCTCTTACCCAGAGAGTCATCAGAAGTAGGATGAGAGCCCCAGTGGCATCTGTGCAGGATGGGTGATCTGTTAGTGCTCCCAGGTGAGGGAGATGCACTTTGCATGCAGATCCACTGTGCCATGATTACACCTGCAGTTAAGTGACCTTCAGCAGGAGAAAGTAGGACAGAAATGCCCTGGTTGAACTTGCTGTCTCCCTGAGCTTCCAGTGGTGCAGATCAGTCATTTCTGAATTGATCTGCAGACCACCATCTGTCTCCAGAGAAATGGCTGTTGTCTGCTGGTGACACTTCTACCTGTTAACTGCTCTAATAAACAAATCAAAAGATCTGCACGGAGTGAAGCAAATAGAACAGATGATCTCCACCTGAATGTAATCGAGTGTCTCTCTGAGATGCAGTTCATATCAGGGAAGCATTTTAAGAGTCCCTGGGTTGATGAATCATGAGCCATTAGCGGTGTTGCTGAGAATCAGCTGTGACTTATTGCCCTGCTCAGAGACAGGAAGGTGTAAGGGGCTTCATGCTCTGCAAACCTAAATGGAAGAGCAGGTGAGTAATTAGTCTCTGTTTGTGTGCAGAAATATAGGCAGAGAGAAAAGTACTATGCCTGCCTGAGGTGGAAGATGACGACTTCCTAGGTCAAGCAGAGCAGGGCTTCAGCACTGACATGCATGGTCTAGCTGAGGAAACTAGAACATGTCAAGAGATGCTCAGCAGGAGGCAGTTGGGAAGATGCCCCAGATAGCCCAGCTCTTCCAGAGTTACAAGCAAGCTGCTTCATTTCTTGGTTATTTACACTTCTCTCTGTAATGCTGCTCAGTCTGTATGCCCTCAGTAGAGATTTTGCTTTGATCTGAAAAGACACTTAGGAAGGCTGCAGTCCCTGTCTGAGGTCCTCGCTTAAATGTCTGATTGAAAGCTTTGCTGGCTGTTCCAGTGTCTGCACAGCTGTCTTATAAGTGCGCTTATGGGTTAGCAAACATGGGAGGGAGGGAGGGAGTGAAGGGTGGATTTTGCAGTAGAGCTACAGACAGGCTTCTGTTCTGACACTGTGGGTTACCGCTGTTTCCATGTCTTGTAACAG
Seq C2 exon
AGTACTAGGCTGCATGGGCTGTCTGGAGAAAGAAGTGAAATTGGACTATGAGCGCGCTATGAACAGGATGATCTTTGACAGAGCAGTCACTTCCAAACCTCAGATATTTTCTTATGTCACCCTGCCAGACAAGGAGGAGAGGAAAGTACCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTGTTTCTGGCTGAAG
R:
TTCCTCTCCTCCTTGTCTGGC
Band lengths:
349-1589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]