RnoINT0048560 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7392162-7394582:-
Coord C1 exon
chr16:7394330-7394582
Coord A exon
chr16:7392320-7394329
Coord C2 exon
chr16:7392162-7392319
Length
2010 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CTCTCTCCTCTCTCTGATAGCGT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GAAGGCCACCACTCTTGGACACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGACCCACGAGTGTTCACACAGCGTGTGGTCCAGGCCAACGCTCTGCGCAAGAACACAGAGGCGCTGTTGCTCTACAACCTGTACGTGGATTGCATGCCCACGGAAGGCCAGCGGGTCATCAACGAGCAGAGCTTGAGCAAGATAAAACAGTGGGCTTTGAGCACACCACGCATGCGCAAGGGGCCGAG
Seq A exon
GTGCGTCATGTGCTGCAGCGACCCTGGACCTCACTTTGTGGGTGGTGTTGCCAGAGAAATCGCTGAGACATCTCTGTGAGGTGATGTCATTGGGGCTTCTGTTACTGTGGTCAAACACCATGACCAAAAGTAACTTGGGAGGGAAAGGGTTTCTTTTATCTTGTACTTCCAGGTCCATCACTGAGGAAATTTAGGGCAGGAACTCAAGAAGAGCAGGAATCTGAAGGCAGGAACTGAAGTAGCGTCCACGGAGGATTGCTGCTTACTGGCTTGCCTCATGTCTTGTTCCTCGTGGCTTGATCAGCCTGTTTTTTTTTTTTTTTAATACAACTCAGGAGCACCTGCCCATGGGTGACACTGGGTTGCATTCACCCACATTAATCATTTATCAAGAAAATGCCCTACTGACTTGGCAACAGGCAGTTGATGGAGGCATTTCTCTGTTGAGGCTCCTCTTCGTAAATACCACTAGCTTGTACCAAGTTGGCACAGGTGACTTGCTGACTACATCAGGCCTTAAATTCTAAGTGTGGTCCGGCTGTCTCCAGTAGCCTCGTTGTGGAGCCTTATGGGCTCGTGAATTCTTGCTAGGTCGAAAGGGTGAGAGTGCATTGCAGATTCTTTTTAATTTCTGTGCTGAAATGTGGCTAGTGTCCTCTTCAGGCTGACCTCCTGCCATTTCGCTACACTCTCACCATGCTTTGAATAAGTTCGTACTTCCTGGCATAGCAGGAAGTCCTCAGCTTAATTTAATTTTCCCAGATACAGCCTTGAAACGGACTTTTAAAGATTTTAAATTTTATTTTTATTTTATGTGTATGAATGTGTGTGTACACACACACACACACATACACACACATATATATATATGGATATATATATGGATATATATATATATGGATATATATGCCTGGAGTCCGTGGGGGCCAAAAGAGGGAGTCAGGGCCCCTGGATCTGGAGTTCCACATGGTTGTGAGCTGCTTTATGAGCTCCTGGGGAAGAGCAGACAGTGCTCTTAACTGCTGAGCCACTCTCCAGCCTCTGAAATAGGTTTTTTTTTCTCCCAGAAGGCCCTTAGTGGGGAATTTAGAACCAGGATTCAGCATTTGATGTATTCGTTGCTACTGGGAGATGACTCCTGTAAGGTTCTCAGAGAGACAGATCTAAGGGAAATGTGTCTTTTCTGGATCTACCTAATCTTACCTATAGTGCCTCTTTTACCTCCATATTTCCTCTGTGTCCATCTGTTTTCTCAAAGTGTGAGCCCCCAATGATACCTTCGTATTGGCCGCAGCACCACATGACTCATTCTGACTTCCGCAGACTTGTGGCTCGCGTCACCTGAAGAGGATCAGTGTCTGTCATCGAGCACACGTTAGCTTATTCGCTCAGTCCTAGAATACTCCAAGAGTAGCTTCAAATGGCCGGCCTGTGCCCGTTAGGACAGAGTCTACAGTTCTTACGTTCTTTTTGTTGTTCTGAGACAGTTCTGAGCTCATCAGTTCCGCCCTGCCACGCAGATCAGGGATCACAGCATGGACCTGCTTCTCAGTGGACATTTGTGGCATTTGTGTCCTTTCCCCCATTGGGATGGAAAAGATAGGCAAAATATTGTGTTCAAGGCTGCTTTGGTGATTATCCTACATCAATAGGGTATAATACTTACCATTTTATGAGATATACTTTGGTTCAATTTTAAAATTTTTTCTTTTGAAAATTTTATTTGTTTAGTGTGTGTGTGTCTGTCTGTCTGTCTCTCTCTCTATGTATGTGTGTGTGTGTGAGTATGTGTGTGTGTGTGTACACCAAAGGACATATAGAGGTCACAGGATGACTTTTGGGAGTCTGTTCTTTCCTCCCACCATGTGGTTCCTGTGAATCAAATTACAAGCCTTGGTGCAAGCCACTGAGCCTTCTCACTGGCCCACGATTTGTTTCTGTTACCTATAAAGTGTATCACATTCATAATTTATGCTCAGGAGTGTGTGAACTCTCTCCTCTCTCTGATAG
Seq C2 exon
CGTCCTGGAGCACCTTAGCAGCCTGGCCAGAGAAGTGAACCTGGACTATGAACGCAGCATGAACAAGATCAACTTTGACCAGATTGTCTCTTCTAAGCCAGAGACATTCTCCTTTGTGACTCTTCCTGAAAAAGAGGAAGAAAAGGTGCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]