GgaINT0019490 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3076995-3078301:+
Coord C1 exon
chr12:3076995-3077033
Coord A exon
chr12:3077034-3078122
Coord C2 exon
chr12:3078123-3078301
Length
1089 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TCTGTCTTCTGTCTCTGCAGCTG
3' ss Score
12.26
Exon sequences
Seq C1 exon
CTGGCCTCCTAGGAGAAAGAAGTTACAGAGATCCAGTGC
Seq A exon
GTAAGTAAGAGCAGAAAGATGCAAAAGAGACTGGACAGGCTGGTGGGCACAGCATGGAATAGTTTACCTGTGCCTTCAGCAGGCAGACACTTGCCCAGACAACAGCCTTCTGCAGAAGTAAGCCTTCTGTTACTCCCCATCTGTTGCAGTCTGTGGACAGCTGAGCAGGGAGGATCTGATCGTGGTGCTACAGCCATCTATGAGAAAAGAAGGACTCATTTGAAGTGAAATAAGTCCCTCTTGTATTTGACAGGGTGGGAATTTAGGATCATCTTTGCAAACGTGCTCTCCTCTGCAAATCTGCCAGGAGGAAAGAGTGAGAATGGTGGGCTATGAGAAAGGCAAAACAAAACAGAGCTTTCTGAGTGCTTTCAGTATTCATAGGTGCCAATACCTGACCACGAGCTCGGGGACACAGTGAAGTATATAGCTGTAATTTAAAAGAGAATTAACAGATTTTGGAAATAATGTCTGAAGTAGCAGTGTGTCACAGAGTTCTACGTGCGTGGCAGTGTTGGTAGTGATCTTGATTAGAATTAAGACAAGTATTCTGTACTCTGAAACTAGCAGCTGTGTTTAAGTTTTGCCACTATTACATAATATGTCATTCCTCAGTCATTCTTCAGAGACTTTACATTTGCTGAGCTCAATGATTTGCATGGTGATGTGGTTCAGGGGACACCTTCTAGCTTAAAAGTAGCTGAGACTTCACTTGGGGGGGGGTACAGGAAGAGAGGAGGAATACCTGAGTATTTCAAGTAGGTACCAACTACCTGCTGGCAGTATCTCCTTTTCCTGTGGGGTACACATACCCTTGAGACTGCAGGATTGTTGTGATGCATTCTGCCCTTCTCAGATCTGATGCCCTTCAGAAGGGAAACTCGCTGCCAAACTCCCTATTGCAATGAGCTGGGACTTGTTCAGGGCCTCACACAATGTCCATAATAGGAAACTGGGGGGAAAAGAAAGTGCATTCTTGGCCTAATCCTAGTAATGTCTCTGCCTCTCAGTGCCACCTATCTGTGCTGCTAGGACTTCCTTGTCCCAGAGCTGCTACCTTGGCACCCTCTCTGTCTTCTGTCTCTGCAG
Seq C2 exon
CTGGAGCAGTTGCAGTCAAAGACTTGAATGAGCCCTTGGTTGATGCCACTATCTACGTGTATTTGACCATCACATCCCAGCTGTTGCCCACACCAACAAAGTCTCATTACACCTTTAACCTGAGAGACCTCTCCAAGGTGTTCCAGGGCATGCTCATGGCTCAGCCCAGCAACGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCCTAGGAGAAAGAAGT
R:
CTTGACGTTGCTGGGCTGAG
Band lengths:
217-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]