RnoINT0048600 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7363608-7366905:-
Coord C1 exon
chr16:7366867-7366905
Coord A exon
chr16:7363787-7366866
Coord C2 exon
chr16:7363608-7363786
Length
3080 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CCCACTCTCCTGTCCCACAGCTG
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATGGACTCCTTGGAGAGAAAAGTTACCGAGAGCCTGTGC
Seq A exon
GTAAGTGTGACCAGGGTCTGGGAGGATCCTGAAGGAAAGGGACTGTAGTCTGGGGGTAACCCTGGACTCTGGCTAAAGCTAGGTAGGTTAAGGTTGGGACCATGGACCCTAACAGGCCCTCCTCAGGCTCATCTGGAGCCAGAGCGCAGTCAGCACTGCCGCGGCCTCTCTTCAGGGTCCTGTACCACTCTTGGGGCCACTCCATTCCGTGTCACACTCATAGCGGGGAATTAAAGAGGAAATGGATCCAACAAACTCCACAGTCTGAAAGCCACAGTGAAGAGAAGCCTGCTTGTCCAGGGAGCAGGCACAAGCAGTTTGCAGCCAGGAGGCAGACTTCCCTCTGTGGCAGCGTCACACAGCTCTGATATGTCAGTCATCACTCAAGGCAGCTGGCCACATCAGGTTCTATCTTGTCCTGGTGCCTGCCTCTTCCTTCTCTTCCTCTTAGCTGAAAGAGGTCGTCCGGCTCCCTCTCTGAGCCTCAGGAACTACATCTCTCCTGTTACAGGCATCCCCCAGGGGCTCCTGTCACCTTGACTGGTGCTTCCTATTCTAGCGCACATCCGGCCCCTCCTCTTTGGCCTAATGGAGGATGGGAGTCACACATCCCCCAGGATCAGTATTTTGTGTTCCGCTGGACCACTCCATCAACATATAAAGATGTCTATATGTGGGGAGGGGGGTGCATGCCTTTAATCCCAGCACTCAAGAGACAATGGCAGACAGATCTCTGAATTTGAGGCCAGCCTGATCTACTGGTCTACAGGTTAAGTTTGAGGACAGTCAGAGCTACATCGTGAGACCCTGTTCTAAAAACAAAGCGAAACAGGCGAGCATGTCCCAGTTTCCCCAGTCTTGATTAAACAAAACCCCAAATTATCTCTGCCGCCCAGATCCCACTTTCCCCCACTGCCTCTCTTCGCTGCTTAGCTTTCTAACAACGAAGCGCTCCAGAGCTCTTCTCCCACTGACACGCCCACATCCCTCCTGGCTCCCATTGGGTCACCTCCTCCTCTGCTGACCACAGTGACATCAGCTCTCAGGCTTTATCCACTCTGCAAACAGCCCTTCCTCCCAGGCCCTTCTCCCTCCTGGGTGTATCAGTCAGTGTCGTGTTGCTCTGAAAAAGTAGCCTAAAGAAGGAACGGTTTCTTTTTGCTCACTGGTTCGGAAGTTTCGTCTCTGATTGGCTTGATCCTGGTCTGTGGTGAGAAGAACTCCATGACAGCAGGAAGCATAGGAAAGCCAACTTGTTCACTTTGTGACATCCAGGGAGTGACGGGAGGATGCCAGGGCCATGTACAGTCTCCGAAGATGCTCCCGAAGCAGTCTTCTTCCTCCAGCCAGGCCCACTTCCTTCACAGGTTCATTACAAACTCCCTTCATCCGTGAATTCACCTACTGATGAGTTTAGTGTGTTTGTGATCCAGGCATCTCTCGCGAGCACACCCACCAGCTAGGGACCAAGCTTTCAAATCACAAGCCTTTTTGCAGGGAGTCACTTCAAACACAAACTATCATCTTGGCACCCCATCTTGGACTAACTAGACACTGACCTCCAGCCCCCTTTTACATATGCTGTCCTCAGACAGTCTCATCCTGGCTCAAATACAAAGTCACCTTTATGTCACCAGCATCCAAATCCACACCCTCAGTCCACACATCTGATTCCACATTTCTCAGATTGAACCTGACCAAATCCGGGTTTCTGGCGCCCTGTCAGGCTCACCTTCGGTGATGGCAGCCCCGTCCTTCCAGATGCTCATGACAAGAACTTCATGGTCATCCTCATCCGTTGGCTTTCTCCGCAGGGTCTGTCCCAGTCAGCATACCGCTCTGTCCTCATTCTCCCAATCACTGGGGCAGCCCTCCCCTGATCTACTCACTCTGCCTCCACTTAGCAACGATCCATCCTCCTTCGGCCTGTTAAACGTCCATAAGCCTGCTATATTCCTAGCGACTCTGGAGGCCATGGTAGGAGGAGAGTCACTTCAGTCCACGAGTTTAAAGTTAGCCTGGGCAATACCCTGTCTCAGAAATACATAGCACCAAACGTATCGTAAGGCCAGTGCTCCCCTTCTGGTCAACTGTCATAGCCAAGGGACTGTGCCTGGAAGAATGTCCCTGCCTCACACCCCACATCACATCTACAGCTCAGCCTCTCCCCTTGGTCCATGACCTCCTCTCTCCAGGTGTTTGCTCCTGTGGGCCCCTCTGCCTGCTTTCTCCAGCAGTGCACACGCTGCAATCTCGCCCCTTTATCTCAGCTCGAATGTCTCCCTTCTCAGGGTGATACCCCCCAGAATTTCTGGAGTCACTCCAAAGCCTTACTTTGAGGTTTCCCAAACTTTCCTCTTGCGCAAGTCTCACTGTAGCATGTTCCACCTGGTCACTGTCTCCTTGTCGGTCCGTTTCCAGGACAAAGCTTGCCAAGGGTGAGAGGCGTCTGTGTGCGTCGACCTCTTGCTCACCACCTGAAACGTGCTCCGTCTCCTGACCCGTTGTCCCTTCCGCGTCCTCCCGGGACCCCAAGTTCCCACTCTCAGAGTTTAGTTCCGGTGGAGACGGGTAGTGTTCATGGAGCCAGCACATGGCTATGGTAGTGATAAGAACCAGCTGGAGCTTTCGCAGCTTGACAAAGGGTAGTGAGCCCACAGGGTCAAGCCTGTGGTCCAGGTCACCCTACACCACCATAAAGTCACTCTTAAAGCCTGCAGACCCATGTGTGATTCAGCATTGCCATGTTCAGGCCTGGCTGACCATAGGCTCAGGAGGCAAGGCAGGAAGGGCTCACCCAGTCCTAAGCCCATTCACGCCCACACCTCTGTGACTGCATCTCAGTGCCCCGTGCATGGCTAGTTGTCAGGAACGTGGGGGTAAATCTAGGGCACAGAGAACAAGAGATCCCCACTCTAAGGTAGGGACATCAGACAGGCCTTACATGGGAGGAAGTGTCTAAGAAGGGGCTGAAACAAACGTGGAATTCAAGCCTAAGACTATGGAATGAATCGTGAGGGAGAGCAAAGAGCAAAGCCAGGACCTGTCTGTGTGACCCAGCCCACTCTCCTGTCCCACAG
Seq C2 exon
CTGGGGCCCCCAACATCGTCCACATGACGGAGCCCCTCGTGAACGCTACCATCAGTATATATGCTATCATTACCTCCCAGCTGCTGCCCACACCAGCCAAGTCCCACTATACCTTTAACCTGAGGGACCTGTCCAAAGTCTTCCAGGGAATTCTCATGGCTGAACCAGCTAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]