Special

MmuINT0050532 @ mm9

Intron Retention

Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32092241-32095642:-
Coord C1 exon
chr14:32095604-32095642
Coord A exon
chr14:32092420-32095603
Coord C2 exon
chr14:32092241-32092419
Length
3184 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CCCACACTCCTGTCCCACAGCTG
3' ss Score
9.25
Exon sequences
Seq C1 exon
ATGGACTCCTTGGAGAGAAAAGTTACCGAGAGCCTGTGC
Seq A exon
GTAAGTGCGACTGGCAGCCTGGGAGGGTCTTGAAGGAAAGTTGTCTGGGAGCAACTCTGGACTCTGGCTACAGCTAGATAGGTTAAGGTTAGGACCATGGACCAGAGTAGGCCCTCCTCGGGCCCATCTGGAGCCAGAGCACAAGTCAGCACTGCCGCGGCCCCTCTTCAGGCTCCAGCACCACACATGGAGCCACTTCATCCTGTGGTGCCTAGCTCAGTGTGACACTCATGGTGGGATGGAAAGGGGAGTGAATGAAGAAATGGAGCCAACAAACTCCGCAGCCTGAAAGAGCCACAGTGAAGAGAAGCCTGCTTCTCCAGGGAGCAGGCAACAGCAGGAAAGCGGGTGATTTGCAGCCAGGGGGCAGGCATCCCTCCGTGGCAGCCTCAGGCAGCTCTAATCTGTCAGTCATCACTTCAGGGCCACGTCAGGTTCTGTCCTGTCTTGGTGCCCACCTCTTCCCTCTCTTCCTCTCAGCTGAAAGAGGTTGCCAAGCTCCCTCTCTGAGCCTTAGGATCTGTATCTCAATGTGTCACAGGCATCTCCCCGTGGCTCCGGTCACCTTGACCAGGAGGGAACTTCCTATTCTAGTGCATGACTGGCGTCTCCTCTTTGACCTAATGATGATGGGAGTCACACAGCCCCCACTAGCAGTATTTTTTCTGTTCCACTGGGCCACTCCATCAACACATGAAGATGCTGTGGGGCATGGTGGTATATACCTTTAATCCAGCACTCAGGAGGCAATGGCAGGCAGATCTCTGTGAATTTGAGGCCAGCCTGATCTACTGGTCTACATGATAAGTTTGAGGACAGCCCAAAGCTACATAGTGAGACCCTGTTCTAAAAACAGACAAGCACACCCAGGTTTCTCCTGTCTTAATTAAACAAAACAAATTTTCTCTGACACCCAGATTCCTCCTTCCCCCACTGCCTCACTTCTCTGCTTAGCTTTATAACAAAACTGCTCCAGAACTCTTCCCTCTGACACGCCCACATCCCTCCTGTCTCCCACTGAGTTACCTCCTCCTCTGCTGACCACAGTGATGAGAGGGTGGCCATGCCAGCAGTCAACTCTCAGGCCTTATCCACTCTACAAACAGCCCATTCTCCCAGGCCCTTCTCCCTCCTGGGTGTATCAGTCAGTGTTGTGTTGCTCTGAAAAAAAAATAGCCTAAGGAAGGAACAGTTTCTTTTTGTTTGCTGACTTGAAAGTTTCATCTCTGATTGGCTTGCTCAGGGGCTCTGGGTCTGTGGTGAGAAAAACTCCATGACAGCAGGAAGCATGGTAAAGATGTTCACTCGGTGGCATCCAGGAAGCAGAGGCAGACAGGAGGATGCCGGGCCCATGGATAGTCTCCATAGATGCTCTCCAAGCAGTCTTCTTCCTCAAGCCACGCCCACATCTCACAAATTCACTATGAACCCATTTGTCAGTGACTTAGCCTATTGATGAGATTAGTGTGTTGTCGATCCACTCATCTCTCAGTGATCACATCCACCAGCTAAGGACCAAGCTTTCAAATCACAAGCCTTGGCAGGGAACCGCCTCAAACACAAACTGTCACACTAGGTGCCCCATCGTAGACTGCCTGGACACTGGCCCCCAGCCCCTTTCCCTCTTAAATACACTGTCCTCAGACAGTCTCATCCTGGCTCAACTATAAAGTCATCTTTACGTCACCCGCATCCAAGTTCCCACCCCCAGCCCACACATCTCCCCTACACACCAGATCCCACCTTTCTCATCTATCCTCTGTGTATCTCAGACTGCGCCTGTCCACATTCAAGTTTCTGATGTCCTGTCAGGCTGGCAGCTCCATCCTTCCAGATGCTCATGACAAGAACTTCACGGTCGTCATCTTCCTCTCATGCCATCTGACAACTGTCAGGAGACGCCTTGGCAATCTCCACAGGATCTGTCCTCAGTCAACTCGCCGCCCTGTCCTCCTTCACCCAACCATAGGGACAGCCCCTCCCCTGGGCTTTTCACTCTGCCTCCACTCAGCAATGACCCATCCTCCTTCGGCAGCTAGAGGGACCTGTTAAAGTGTTCATAAGCCTGCCTATATTCCTAGCTACTCAGGAGGCCAACGTAGGAGGAGGATCATTTCAGTCCACAAGTTTAAGACTATCATGGGCAAGACCCCGTCTCAAAAATACATAGCACCAAAAGTATAGTAAGATCAACGTTCCCCTTCTGGTCAACTGTTGTAGCCAAGCGACAGTGCCGGGAAGAGTGTCCATGCTTCACACCACACATCACATCTCCCGGTCAGCCTCTCCCATTGATCCTTTACCTCCTGTCTACAGGCGTTTGCTCTTGTGGGCCCCTCTGCCCAGACACACTGCAATCTCACTTCTTGATCTCAGCTCAAATGTCTCCCTTCTTGGGGGGATGTCCCCCAGCATTTCTGGGCTCACTCCAGACTTTGAGGTTTCCCAAACTTCCCTCTTGCTGCAAGTCTCTCAGTAGCATTTTCCACCTGGTTGCTGTCTCCTTGTCATCCATTTCCAGGACAAAGCTTGCCAAGGATGAGAGGCATCTGTGTGCATCAACCTCTTGCTCATCACCTGGAATATGCTTCGTCTCCTGACCCTTTGTCCCTTCTGAGTCCTCCCGGGACCTCACATTCCCACTCTCAGAGTTTAGCTCCACATGGATACAGGGGTATTTTTTCATGGAGCCAGCACATGGTGGTGATAAAAGCTAGATGGGGCTTTAGCAACCCAACAGAGGGGTGGTGAGCCCACAGGGTCGAGCCTGAGGTCCAGGTCACCCTACACCCACCAGGTCACTCCTGAAGCCCGTAGACCCATGTGTGACTCAGCATTGCCATGTTCAGGTCTGGCCATAGGCTCACGAGGCAAGGCAGGGAGGGCTCCCCCAGTCCTAAGCCCATTCATTTCCACAACTCTGTGACTGCATCTCAGTGCCCTGTGCGTGGCTAGTAGTCTGGAATGTGGGGGTAATCTTAGGCACAGAGAACAAGAGATCCCCATTCTAAGGTAGGGACTTCAGGAAGGCCTTCCAAAAAAGGAAGTGTCTAAGAAGGGACTAGAACAAATATGGAACCCAAGCCTAAGGCTATGGAATAGGTGCTGGGGCCGGAAGGGGAACGGTCAAAGGAGAAAAGCTAGGAGCTGTCTGTGTGACCCAGCCCACACTCCTGTCCCACAG
Seq C2 exon
CTGGGGCCCCCAACATCGATGATTTGACGGAGCCCCTCGTGGATGCCACCATCAATGTCTACGGTATTATCACCTCCCAGTTGCTGCCCACGCCAGCCAAGTCCCACTACACCTTTAACCTGAGGGACCTGTCCAAAGTCTTCCAGGGAATGCTCATGGCTGAACCATCTAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.017
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127752=AAA_7=FE(4.6=100)

							
A:
NA

							
C2:
PF127752=AAA_7=FE(20.8=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000043281





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:52375994-52378601 
ALTERNATIVE
HsaINT0049177
(DNAH1)
Human
(hg19)
chr3:52410010-52412617 
ALTERNATIVE
HsaINT0049177
(DNAH1)
Rat
(rn6)
chr16:7363787-7366866 
ALTERNATIVE
RnoINT0048600
(Dnah1)
Cow
(bosTau6)
chr22:49061768-49062856 
BtaINT0050120
(DNAH1)
Chicken
(galGal4)
chr12:3077034-3078122 
ALTERNATIVE
GgaINT0019490
(DNAH1)
Chicken
(galGal3)
chr12:2903323-2904411 
LOW PSI
GgaINT0019490
(DNAH1)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"