HsaINT0049177 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52409971-52412796:+
Coord C1 exon
chr3:52409971-52410009
Coord A exon
chr3:52410010-52412617
Coord C2 exon
chr3:52412618-52412796
Length
2608 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CCATTCTCCTATTCCCCCAGCTG
3' ss Score
8.71
Exon sequences
Seq C1 exon
ATGGACTCCTTGGAGAAAAAAGCTACCGGGAGCGTGTGC
Seq A exon
GTAAGTGTGGGCCTGGGCGGGAATGGGGCACTGGTTCCAGGAGGAGCCCTGGGCTCTGGTTGGGTGTGTTGAGGCTGCGACCAGGCGCCGTGGTGAACCATCCTCAGGTTCATGCAGGGACCTTGGGCCACTAGGGTGCCAGAGCGAAGGTTGACACAGGCACTGGCTGCCCCATAGGCTCATTCACCCATTCTTAGAGCCCTTCCATGCCTGCGTTAGTGTCCAGCTGATGATAGATGCAAATTAAATGCAAAATGAATGCATAAATAAGGGAATCCAACAAACTCCCACCCTGTGTGAAGAATCAGAACTCCAGGGAGCAGGTGTGCACAGGAAAGCCGGGAGTGGTTTGTGCGGGGCAGGCATCGTGGTGAATCTGCCCGTCGTCGCGGCAAGGCGGCTGACCACTGCAGTCCCTGTCCTTGCCCAGGCCTGCCTCCTCACCCTGCCTTCAGCTGAAAGAGGCTGTCGAGAAACAGCTCCCTTTTGGGTCTGCACCCACCTGCTTACCTGCGCCCTGCCTTCCCTCCTGTGGCTGGGAACGGACTGCTGCTCCACAGCAAAGCCCAGCCTCCTCCTGGGCCTGCCTGGGAATGTGGCACCCCTCTTCCCCGCCAACACCAGTGCTCCCTTCGCCACTGGGCCTTCCACAAACAAGCCCCATTCTCCATCTCAACCACCAAATGCAAAACAGCCTCTCTGGGCCCCCTTCCCACCTGCCCCAGCCCGTCACTCTACCTCTCTGCTCACCTTGATAGCAAAACTCCTCCAAAGCATTGTCTTTCCCGCTGCACCCGCCCTCCCCTCCCACTTTCCTGTGAATGCACCTCTCACCCTCTGAGAGTTCTTGTCACCAGTTGCCTTCTGTGGCCAGACCAGCGGTCAGCCCTTGTTCTCGCCTTCCCAGGGGTCAGTAGTGCTGGCCGGCAGACATCCCCTTCCTGCCACGGGCTTCTCTCAGGCCTCCCCCATCCCTGGCTGCCCATTCTCGGCTGGACTGGGGCTTGGTCTCCAGCCTCCTCTCCCTCCAACCACACTCTCCTGAGACAGTCCCATCCCGCCTCTGACGGGGAAAACCATCTTTGTGCTGGCAACTCCCAAGTCTACCTCCTCAGCCCAGACCTCTCCCATGAATGCCTGATTCCACATCTTCCCTGGGATGTCCACAGGGTATCTCAGGCCAAACCTGTCCAGAGCCAAACTCCCGAGTACCCCGGTCCCCGCACTCTTCCCATCTCAGGCAATGGCAGCTCCATCCTTCCAGGTGCTCCCAGCAAGACGGGGTCTTGGCGCCATCCTCCATCCCCCCTTCCCTCACCCCACAGCTCACCTGTCAGGAGGTCCCATAGGTTCTCCCTTGAGAACCCATCCCAATCGGCCACTGTTCACCACCCTGTCCTTGCCCACCCAGCCAGTGCTGTAGCCCCGCCATGGTCTCCTGGCAGCTGCCTTCACCTGCCTAAGGTCTATCTTCCGCTTGGGGCCACAGGGACCCATGAAATCATTCCATCAGTCCACACTCCTCCTCTCTCACCCATCGCATCCAGGCAAGAGCCCGGGTCTTGACAATGGTAGGCAAAGCCATCCTCAGTTCGCCCTGCCTCATCCTCTGATCTCACCGCCTCCTGCTCATCCCCTCATTGCTGGTCCTTAAGATGCCAGGCCTGCTCCCACCTCCAGGCCTTTGCCCTTGCTGTCCCCTCTGCCTGGGACAATTTTTCTCCAGTTATGTGAAAGCTTGCATCTCACTTCTCTGCTTGACCCCCCTTCCTCAGTGAGGCCTCCCCCAGCATTCCGTAAAATCGCCCCCAAGCCCAACTCTGGCCCTCCCCGGACCCCTCTCCTGCTGCAGGGCTGCCCGTAGCCCTTGCCACCTATTTGCTGTCTTTGTTACTTGCTAATCCACTCATTGTCGTCCTTACCAACAAGAGTGTCAGCTTGAGGGCAAGGAGTGTGTCTGTTTGGGTCACTCTGTGCCCAGTGCCTGTGTCAACAGACAGGCCCCTCTCCTGCCCTTTCTTTCCATTTTCTCCACTTCTCCGCCAAGTTTCCACTGACAGAATTTGGGTTCCCAGCACAGAATTGGATAGTTTTCAAAGAACAGGCCGATAGGTGTATGAGTGGTAAAAATGCAGGCTGAGGGGTAGGCAGCCCCGAAGTGGGTGGTAAGCCCTCAAGGTCGGGGGTGTGCTCCAAGCCTCCCCACGCCCACTCCGGCATCTTGAGGCCTACGTGGATCATGAGACCCTCCCCAAGTGTGGCTCAGAGGTGGAATGTTCAGGTTTGGGCACAGCCTCCATAGGACAAGGCAGTAATGGCCCCGCCCAGCACTGACCCCACGAGCGCCCCCAGTTCCATGATGAGTCCCAGTGCTCCGACAGGCCATGTCAGCATAAAGATATAAGGGGTGCAGAGCAGGAGATTCTTCACCTCCCCCAAGCTGGGGGCATCCGAGATGGGGCCAAAGGGTACGTGGAATCCAAGCCTGAAGGCTGGGGAAGGGGCTTGGTGGGGGGCACAGCACAGCAAAGGCAAGGAGGTCAGGACCTGCAGAGGCGGCAGAGGGAGCTCCTGGCATGTGACCCAGGCCATTCTCCTATTCCCCCAG
Seq C2 exon
CTGGGGCCCCCCACATTGCCCACTTCACGGAGCCCCTTGTGGAAGCCACCATCATGGTGTATGCAACCATCACCTCCCAGCTGCTGCCCACTCCAGCCAAGTCCCACTACACCTTCAACCTGAGGGACCTCTCCAAGGTCTTCCAAGGCATGCTCATGGCTGACCCGGCCAAGGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)