GgaINT0019517 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3099131-3099975:+
Coord C1 exon
chr12:3099131-3099301
Coord A exon
chr12:3099302-3099795
Coord C2 exon
chr12:3099796-3099975
Length
494 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCCTCCTTCTCTGCCCGCAGGTC
3' ss Score
14.35
Exon sequences
Seq C1 exon
GTGCATCAGGACTTCCGCCTCTGGCTCACCAGTCTACCAAGCAACCACTTCCCTGTGTCCATCCTCCAAAACAGCTCAAAGATGACCATTGAGCCTCCCCGTGGGGTCAAAGCCAATCTTCTCAAGTCCTACATCAGTTTCAGCGATGACTTCTTGAATTCCTGCCCTAAG
Seq A exon
GTAAAGCCCAGCTTTGCTGTCCCCAGCCCATGCCTGCTCCTATGCACACTCTCCCCCTGGACGCTGCTCCTCTCTAGACTCAGATCTCCCCTAGAGCTCTCATTTAGCACTTGTGAAATCATAGCACGATAGAATGGCTGGGGTTCGAAAGGACCTTAAAGATCACCTGGTTCCAACCTCCCTCTCACGTGCTAGAGAAGGGGTGGTGGCATCTCTCATAAGCCTACATCTGCTCTGTGATAAGCCAGTTGTCACTGTGACAAACAGAAGCAACGCTACTGTGGAGGCACTTGCAGCTTTGAGCAAGAGAGCAGACCCACACACAGCCTTCCCCAGTGCAGCAGCTTGGCTGAGGTTTCCACCTCTCCGGACTCCAGTTGGTGTTGGTGACTTAACACATCTCATTTGCTGCCTGCTGCCAGAAAAGACTCACATCTTCCAAGGGTGTCTCCTCCCAAGCTGAGCACCTCCTCTCCCTCCTTCTCTGCCCGCAG
Seq C2 exon
GTCACCGAGTTTAAATCCTTGTTGCTGTCACTTTGCTTCTTCCACGGGAACATGCTGGAGAGGAGGAAGTTTGGCCCACTGGGGTTCAACATCCCCTACGAGTTCACGGATGGAGACCTCCGCATCTGCATCAGCCAACTAAAGATGTTCCTGAGCGAGTATGCAGACATCCCATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(14.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGACTTCCGCCTCTGG
R:
TGGGATGTCTGCATACTCGCT
Band lengths:
342-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]