RnoINT0048628 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7349013-7349646:-
Coord C1 exon
chr16:7349476-7349646
Coord A exon
chr16:7349193-7349475
Coord C2 exon
chr16:7349013-7349192
Length
283 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TATCCCTTCCTGTCCCACAGGTT
3' ss Score
12.48
Exon sequences
Seq C1 exon
GTACACCGGGACTTCCGCTTATGGCTCACCAGCTTGCCCAGTAATAAGTTCCCAGTGTCCATCCTACAAAATGGCTCCAAAATGACTATTGAACCGCCACGTGGCGTCAAAGCCAATCTATTGAAGTCCTACAACAGCCTCAGTGATGACTTCCTCCACTCCTGTCAAAAG
Seq A exon
GTAAGGCATCAGCTAGAGAGATGACGCTCCGTGGTCGAGAGTACTGGTGGTTCTTCCAGATGGACCCGAGTTCAATTCCCATCATCCACTTCAGGCAGCTCACAATGGCCTGAAACTCCAGCTCCACAGGGATCTGACACCTCTGGCCTCTGTGAGCAACTCACGAGCACACACCCACACAACTCACACATAGGAAAAGGGCTTCAGAGGGGAGACACCTTCTAAGTACCCACCTCCTGTCCCAGCCCTTCCTCCTATGACTCTATCCCTTCCTGTCCCACAG
Seq C2 exon
GTTGTGGAGTTCAAGTCCCTGCTGCTATCTCTGTGTCTGTTCCACGGCAACGCACTTGAGCGCCGTAAGTTTGGGCCCCTGGGTTTCAACATCCCCTATGAGTTCACAGATGGAGACCTGCGCATCTGCATCAGTCAGCTCAAGATGTTCCTAGATGAATATGAGGATATCCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGCTTATGGCTCACC
R:
TGAGCTGACTGATGCAGATGC
Band lengths:
304-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]