MmuINT0050560 @ mm10
Intron Retention
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31263368-31264020:-
Coord C1 exon
chr14:31263850-31264020
Coord A exon
chr14:31263548-31263849
Coord C2 exon
chr14:31263368-31263547
Length
302 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTCCCTTTCTGTCCTGCAGGTA
3' ss Score
13.59
Exon sequences
Seq C1 exon
GTTCATCGCGACTTCCGCTTGTGGCTCACCAGCCTGCCCAGCAACAAGTTCCCAGTATCCATCCTACAGAATGGCTCCAAAATGACTATCGAGCCACCACGTGGCGTCAAAGCCAATCTGTTGAAGTCCTACAACAGCCTCAGTGATGACTTCCTCCACTCCTGTCAAAAG
Seq A exon
GTAAGGCATCAGCTAGAGAGATGATGGTTCAGTGGCTGAGAGCACTGGTGGTTCTTCCAGATGGACCCAAGTTCAATTCCCACATCCACACCCGGCAGCTCACAATGGCCTGAAATCCCAGCTCCACAGGGATCTGACCCCTCTGGCCTCTGTGAGCAACAGCACCCACGTGCACATATAATTAAAAATCGTTTTTAAAGGTGAGACACAATTCTAAGCACTTACCTCCCTGTCCCAGCACTTCCTCTTATGACCTTGTCTCTACCCTTTCTCTTATGACTCTGTCCCTTTCTGTCCTGCAG
Seq C2 exon
GTAGTGGAGTTCAAGTCCCTGCTGCTATCTCTGTGTTTGTTTCATGGAAATGCACTTGAACGCCGTAAATTTGGGCCCCTGGGTTTCAACATCCCCTATGAGTTCACAGATGGAGACCTGCGCATCTGCATTAGCCAGCTCAAGATGTTCCTGGATGAATATGAGGACATCCCCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027:ENSMUST00000048603:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(21.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGCTTGTGGCTCAC
R:
CTTATAGGGGATGTCCTCATATTCA
Band lengths:
342-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types