GgaINT0021020 @ galGal3
Intron Retention
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7873774-7875626:+
Coord C1 exon
chr12:7873774-7873841
Coord A exon
chr12:7873842-7875580
Coord C2 exon
chr12:7875581-7875626
Length
1739 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CATTATTATTCCTGTTACAGGTT
3' ss Score
9.1
Exon sequences
Seq C1 exon
TTTAGGTGTGGCTCTCTCTAGAGGACATGGAAAATATTTCTTCAGAGGGAATGTAACTGTGGAAGAAG
Seq A exon
GTAAGATACTGTCTAGCTTCTCATGTTCCTTACACAGTAGTTGAATTGTTGATCTGGTAGACCTGAAGCTTGTATGTTTCTCTGCAGATTCCATGAGGGAATTAGATTTTATTTTTTAAGATCTTCTACTTGGGATTTTTTTCCTCATTTACATTAAGCATACTGAGGCCATGAATTTTCTTTAGATTGGCATCATCTCCCCTCCTCCTCTCTCAGCGTTTCACAAACTTCTTGAACACCTCCAGGGCTGATGACTCCATCACCTCCCTGGGTAGCCTGTTCCAATACCTCACCATTCTTTTTCAGAGAAGAAATTATTCCTAACATCCAACCTGAACTTCCCTTGGTGCAACTTGAGGCCATTACCTCTCCTCCTATCACTGTTACTGAGAAGAAACTGACCCCCACCTTATTACATCCTTCTTTCATGGAGTGCAGAAAGCAATAAGTTTTCCTTGAGTATCCTGTACATGGTGTACATATACAGTGGAGGAGCTTTATACTATGAGGTGGAGAGGTTCTGGTGGTTCCTGAGAAAAAAAAGTCTTACAGGAGAGGAAAATTTTCTGATTTTATTCCAAAATCTTTCTTTCCAATTCTACTTCTTAATTCATTCATGATTTTAATATAGTTTCTTCAGGTCTTTGTTCCTCAGCTTTGTTTTGGTCAAAAAATAAGTTCTTGTTCCTACAAGATACATAAAAAGAAATGTTTTAAAGTTTATGGATCACAAAAATGAATGAATAAATAAATAAATAAATACATGCCTGGATAGAAAGAGAGCACGGCAGGAGACTTGGAGCTTACTCTCCAAACTGTTCCCAACCTATCTCTCACCTGTTATCCATCTCAGCCAGCCAGTCTGATACTTCCTTCCAGATAAATCGCTCGCTAACAAAGCCATAACCAACCATTCCTTTTCTCTCACTCTTTCTTGTCTTTTCTGAGTGTTTCTCTGTCATTGACACATTGCTGTCCTCTCTGAGCAGTACAATTACAGTTCTTGTTTTGAATTCCCTCTTTGCCTTTAACCACCATGGCTCTGTCTTTATTTAGTATGTGCTCTGGGGGCTAAACCCAGAGCCTGCCTTCTGAATCATATTTGCTTATTGTCTATTGATACATGCTTTAACAGTTTTGAAAATTGCCAAAGTACATTTTTATTGTGCTATATAACAAATGATATAGTTCTTATTTACAAGCATCTGCATGGCCAGTTAGAACAATAAACCTATTCTGAATCCCGTAAATTGCTGTTTGTGCTCATAGAGAGTGTGCATAGGTTTTTGGGATTTGTTCCTTTTAAAGAAATATTATTTAAAAGTGAAAAACTGCCACAAAATGAGAAGTATACATTTTAGCATGAAGAACTTCACTATCCACAATGAACAAGGAAATATGAATAGGAGTTGTTTGTTGTTTGTTTGTTTTTTACCATTGTGCATTGCTCTGTTCAGGTTTTCTTATAAACTTCAAGTATATCATATGAACAGTTTGTATGAGTTAAACAGGTCAATGCCAAAACAGTTTTTCCTTCCTTTTCATTTTTAGATCTGATTTAGTTGGCTTTTGCCAGTCTGTTAGACTCTGAAATGTATTTGACTAGTTTACTGTGATTTATTATATTGTGGTAATAATGCACTTTCTAAGAAGGAAGGGTTTATGTTATGGAGTGTTTGTTAATAACCATCTGTTACCCAGACCGCTCCCTAAATAAACCATTATTATTCCTGTTACAG
Seq C2 exon
GTTTACATGATTTAGAACACCCTGATGTATCTTTAGCAGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400:ENSGALT00000036263:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]