RnoINT0028156 @ rn6
Intron Retention
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5119256-5124813:-
Coord C1 exon
chr16:5124746-5124813
Coord A exon
chr16:5119302-5124745
Coord C2 exon
chr16:5119256-5119301
Length
5444 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTCTGTCCTTGACTTCCAGGGC
3' ss Score
9.02
Exon sequences
Seq C1 exon
TTTAGGTGTGGCGCTCTCCAGGGGCCACGGGAAATACTTCTTCCGAGGGAATGTAACCATTGAAGAAG
Seq A exon
GTAAGGGGCAAACTTGGGCTGGCCTATCCTTGTGTGTGTGTTTGGGGTGGGGGAAGCTGAGAGCTAACTCCCAGAGAATTGAAGAGCATGCATGACTTTCAAGCCTCTGGCTAGTGATTTGGTCACTTGATTCAGATCACTGCCCTTTGGGTGCTGTTTTACTTGCCAATTTTGTGTGGGTTTCTGAATGGTGGGAACTCCAGCCAGTGGCTGGCTTTGTTATACTCTTTTATCCATAAAGTAGTGGAGGCAAATTATGGGAATCTCCTGCTACCTCTCCTATTCTCATACATTCAGTGTTAGAGAAAGAAGTAAATTAATGTAAAATCTGAAGTCTGAGAAGGACCAATGCAAAGAAAGATGTGGAAGCCCTTGCTCTCAAGATAGTTGGGCCACCCATCTCATTGATTTTGTGTTACCCTTTGCTCATTGGAAATATGACCACTGAAGAGACTGACAGAGGTTGAGAAGTGGAAGTAGAGTCATGTGACTCTAAAATCTTCTACCTCTATAAAGAGCAGGGGGACAGTGACTCCCATAGACATTAGCAATCCCCAAATCCATAAAGTATAAAGTTGTTATCATAGAACATGTCTGTTATGTACCTCAACAGCCCACTAATCCTAACCAGTTACCATTTCCAATATTGTGAACACTCGGAATTATGTTAGCATGGTGTTTCAAGGGTTCTTAGTCTATAAATCACTTTGAGTAAAGCATTTGCTTAACCTTGCCTTTAGGTCAGGTCCATCTGCCCATGGGCCCTGCAATGTTTCACAAGCATTGGGTTTTGTCTGACAAGGAGCCATGATGTCTGATGGAACAGAAGGGAGAGTAGAGGGCTCCATCAGGTGCTGGGTAGAAGTCAGGATGTACTGTCTAAACGCCAAAACATGTGGCCTCTCTTCTCAAAGATATATGAGAGAACAATGAGCCAACCTTGTGACCTAGGCAAGATATACTCTCAAGGATATGTTCTTAAAAGCTATGTTCCCATTTCTAGAATTTTCTAGTTCCATGAGCCATGTGTAGTTTGGAGGGCATTGGTGCCCCTGCAGCAATAAAATTAATGCCCAAGCCATTTGAGATGAAACTGAGAAAATGACTCATGGTCAGAACAGAAAGAGGGGTCCTTTTGAAAAGATATTTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTTATTTATTTTATATATGTGAATACACTGTAGCTGTCTCCAGGCACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAAACATCTCTCCAGCCCCCAGAGTTGACTTTTAAGAAAGGTCTTTAGGACTTTCTTTATAAGCTATCAGTGGCCACCAGGAGACTACTTAAAAAGACTTTTTGTAACATGGTTATAGCAGCTCCCATTCTCTCCTCTACCCTTTCGTAAGACAGAGGTCGGTCATCTTAGCAGGTTTCCACAGCTCAGCTTCATGTATCTGAAAAGCAGAAGCTTCTTATGAAAGGCTTGGCTGCTGGAGATGACAAGAAGCTCAAAGGACACGAGGGAACAAACAGAGAAAGGACTCAGGGTTGGCACACTTTTGTCTCTGTGTGCTTGGCCAAGACAGTTTCATAGACAAGCTCTGAGTCAAAAAGTAGAAAAATGTAGTCACGTGTTCATGTTGCTAATGCAAGGTGAGAGACTCCCAGTCAATCAAGGTGAGAGACTCCCAGTCAATCGTTCCAGGTACATCTGTTCTTATTGTGTGATCATGAAGGGCCATCTTTAGAATTCATTGTTGAGTGGTTTAAGAATCAGACACATGCACATATGTGTGTGTTACATGTATTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAAGTATCGGTCCATCAAATGGCCAAAGTTTCCCAGCTTTTAAAGTCCTCACAATGTCCAACAAGCAGAACCATGCCAAAAACCCTGAAAGGATGGAACAAACACAACAAACAAACAAAACCATACCTTTTTTCTTGAATAAGATGAAAACACATGCCCTCACCTAATTTTTTCCAAGCGAAATATCCCCAAAAATCTTGGCTCAGAGATAATCAGTGTTGGTTAATAAAAGCTGCAGCATCATTTTGTATAAAAATCAATTTCAGCAGCAGTAGTGGTGGTGTGCAGGCTTGTAATCCAACTTGGAGTGGAATTGAGGGATCTCCTGAGTTGAGCCAGTCTGCGTCTAGAAAGTGACTTCTCAGAACAGTCAGAGTACCACAGAGAAACCCTGTCTGATCAAACAGACAAACACACAAACTGAACAAACAAATCAGTTGTTTGATTACAGTCCCCCTGGGTCTAGACGCCCACGAGGAAGAAAGAAATCCCGTCTAGTACGGAGTGTTGTTTTTAATTGCGTGACTCTAGCCCAGCGCTACTGCCAGATTCAATACTACATTTTAACCTCTGTAGTATGTAGTATGTATTTATATTTTAATATATGTCGGAATACAACTGTACGCTGGTCTCGCAGCACCACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAAACATCTCTCCAGCCCAGAAAGAGAGGTCTTTAGTAGACCATTACTCTTAGCCTCTCCTTCCCTTGCTTTCCCTCTCTTGTTTCTTTGTCTCTTGTCTCTGCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCATCTCTTCCTCTCTCTCCCTCTGCTCCCTCCTTCCACTGTTCCTCCCTCCCTCTGTCCTCTAGATTCTGCTCCCCCTCTCTTCTCTCTGGCTTTCTCTCCTGCACACAATTGTCTTTTCGAGCATTTCTCTGCTTACTATCTGCTTCCTGTGTGTTCCACAGCTGTTAGGCTGGCCATTGCATTGAGAGAAATTCAGAACTAAGCAAGAAATCAGTTTGAATACTCAGCAAGGGGGCTAGTGTCTGGTTATCCACACAAATGAGATTAGATCTTCCTCTCTCCATGGGTCCTCTGTAAATAAAAAGACTCAGTCCTGTCAGCTCCCTGAGTAAAAGAGCCCAGAGGCTGCTAGCCAAGAGCTCATCAGCAGTGAGAGCCTTGGGCTGATCATAGCTCCCTTCTGTTCTTGGAGTGGAAAGTTTCTTGCGGATGGTACCCATATTTCACGGGTTGTGTAGTTAGGAAGGCTACTCCACAAGATGACTGGGTTCTCCATATGTTTTGTCAATGCTAGCTTCTACCAAGTTCATGAATAGAAAGCTATACTCAAAATTGAAAGGGTTGGGGCTGAGGGTTTAGCCCAGTGGTAGAGCATTGGCCTAGCAGGTACCACCTTCTGGGTTCAGTCCCCAGCATCCCTAAAACTGTTGAATCTTGAAGCCTAAGCTGGTCTTCCTGCTGTTGTGACTTTTCATGATCTCTTTTGATGGGCTGCTTCTTTTACATAATTATACATAGTGATGACTGAGTAAGTTTGAGTGAGTGTTATTGCTCTCAGCTTCACTGAGTATGATTTTATTTTTAAAAGGATCAAAAGTAGAAGGGAAAGGACTAAAGAAATTTTACATTTTTATTGGTATCCAAGAAATCAGGGAAGAAATTATAGTGAAATTGGTCCCTTGGGTCTCATTGTCCCTGAGTCTGAGCCAGGGTGAGCTTCTGGGACAAAGGGCTGACTAAACTGTAGCAAGAGAAGGGAATAGGCCTGACACCTTCAACTCAGCATCCTGGGAAAGCATGGGCCACAGAAAAGCTTCCACTTCTGTCACTCCTGCCCTGAGGAGCTCCCTCCCTGCCATCTGCAAGGCTCGAATGCTCTTTGCTTTGTTCTTTGCTTCAGAGTCACTTTTTCAGCCTGGCCACCACAGGTAGAACTGAAGCAAAGCTCTGAATGAAGCCTTCCCAAGGCCTTGTTCGGGAGGTGTTTGGTTTGTCACCATCTTTTCAGCATCTATCATAGACTTGTACCCAACTCAGGAAACATGTTAAAGGGAGAAAGAGTGAGAAGGAGGGAGAAAACAAGGAAGGAAAGAGAGGGAGGGAGAGAAGGAGGAAGGGAGAGAAAGAATGAACAAGATTGTCCTAGGGACTAATCACTTTCTTATTTAACCATCTTATAGAGTTTTTGAAACTCTTTCTTAGATAGGAGAGTTGCTATAACTCAAGGTTTGACCTGATACTCCCAAGTGTTCAACAGCTCACTTCCTACAGCACTGAGCATCATTGTGTGGTATATCTAGTATTTTGTGCATCTGCATTTGACACAGAAATTAGAGTACACTGAGTCATTTGAGAAACTGACTCTCCATGAAACATGTTATAAACATCATCAGAGTCCCTGTACATATGTGGCAAAGCTTCTCCTCAGATGATCAATGAAATGGTGGCTCCACAGAGGGCATTATCTCATTCATGTTGCTGTATTCTCATATCTGTGTCTAAGACCCTATAAAAGTTTCTTTATTTGACAGTTTTAGAGTCTTAAAGTTCAACATAACATGGCCGAGGCAGAAAAGGATATTACTGTATTAGCAGAGCCATTAGTATGAGTGAGAAAGTGAAAGAACCATTCCTGGGGCCACTGTATTAATCTCTTCACTTTTCATTAAGCCCCACCCTTAGAAGTTCTGATCCTCTCAATGCTATTGTATTAGGGGTTCAAGTTCCCAACACACATGCACATGTGCACACGCACATAAACACACACGCACGCGCACACACACACACACCCTTCTGGAAGACAAATGATATGAAAACCACAGCACAGATGAAGAAGTCTGTAGTATTCTGGAAAATCCCTAGGTTCATGCCAGCCTCAGCTCTACTAACTACCTTTCTAGACTGATGACTCTCTTTCACTTAGGATCCTGTGACAACTACTAACATCTTTTATCGCTGGTTGAAAAGGAATGAGTATTAACAATCTCATTTCATTTAGCCTATAATTCCACCCACACAACTATGTGTCACGTAAAGATGTAGACCTGTTAGCATCGCAGAGGATTAAATGGCCTGGCCCAGTTCTCAGTGTTCATGTAGCTCCAGAATCTGTCTTCCTAGCCATCCTGTTCATTTTATGAGGTTGAGCTTTTTCTGGGATGAATACCAAGTGAATTTGGTGGTGCTGGCCACACTGGGGTTAAAGGGTTGTGTAGATGACTTTGGACATGAATCCAGAATCCTTGTTCCCTAGCATATCTCTTTGGGGTTGATATCTACCTTGAACCTGCCCCCTCCAAGTACCGTCCTGGAGTATTTGAGGTGTATAGGAAGTTGGAGAAGAGTGATCCTTACTCACTAAAGCTCTGTCCTTGACTTCCAG
Seq C2 exon
GGCTCCATGACTTAGAACATCCTGACGTGTCCTTGGCAGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287:ENSRNOT00000048043:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]