GgaINT0021031 @ galGal3
Intron Retention
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7934287-7937621:+
Coord C1 exon
chr12:7934287-7934362
Coord A exon
chr12:7934363-7937568
Coord C2 exon
chr12:7937569-7937621
Length
3206 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
AATGAATTCCTTCTCTTCAGCCT
3' ss Score
5.37
Exon sequences
Seq C1 exon
AATTACACTTTATGACTACCAGGCCATGTGTAGAACAAACAAAGAGAGTAGCGACAGTGCCCATAGCTTACTGGAC
Seq A exon
GTAAGTACAGTGAATTTTATGAGCACCTTTCCATGTACTCATCAAAGAAAATTGTTGCAGATATCTCATGGCCATTCTAAGCCCATTATTTTAATTTGGAATGCTTAAAACTCTTACGTTTATCATAGTGCATACAAGGAATGGTTCATCATAAACCAAAGGGAAGTGTTAAGCGTTTTTCAGTTCAAATACTTATGCAATCATTTTTACACTGGCCTTCCATTCTGTCTGACGTTCCACCAGAATATCCATTGCACCATGTGAGTCTTCCTCAGGACTTTTTGAAATTGACTATGGAGTGTGCTTTCTTTTGGGAGCTGGGATCACACATGCCGTTTTTGTATGCAAGCATGTATACACATGTAACGATGGAAGTGAAATTTAAAATTTATTTTTATATATATATATATATATACACACACACATATATGAAAGAACTGGTTCATTGGTGAAGTATACAACTGAATGATTTTAACAATTTCTTTTTTCCACAGTATTTGGAAAATATATATTAAAATAAAATGCCAGTGATTACTTAAATCCCTTTCTATCAGTCAGCTCTGGATATAACCCCTGTCCCTTTACAAGGCCTGACTAGAGTAAAGCCAGGTCTAAATACATCTTTTATTCCAAATCATGTCTAATTAATAACTCCAGGGGTTTTTTATAATCATTTATATATTTTGCTGATTGCGATAGTAGTCTATCAGTTAGAACTGCCAAAGCAATAGCTGAACTGTAGATCTTGCATATTGAACAGGGACTTTTTTAATGGCAGTTTTTTCACGAAAAATTATGTAAAAGCATATTGTGAAGCAAAATACTGCTGCAATTTTACCAATCTGGAAAAGTTATCTGATACTATTTTTAAATGAACAGGGCTCCAGCTAGAAAAAATTACCCTGCCCACTTAAACTGCTGAGGAAATATCAAAGTTCTGGCAACTTCCAAATAGTTATAAACGTACAGCATCTATGATTTAATAACTTTCGGGATGTTTTACATGTCCCCATGCTTTTCAAATACCTGCAAATGTGGGTTTACTGCACTTTCCAGACTTATTCACTAATGCCTGAACCTGAAATTAGATTGGTATAACAAGAAGTACTGGGCTGTGCAATGAGACTTACACTATTGGTGAAATAGTGCAGGACACTGTGATTCACATTTGCACAAAAATTTTAAATATATTAAAACTTTTAGCAGCAGCCTTACATTCTGGGACTTGGGGCTTCAGGTCAGTGTGCACAAGTACTCATGACATGTCCTTTTCTTATTTTATTGAAGATACGAAAACTCTTATTTTAATCTTCAAGTGGGTTTATGTCAAATTCAGCAAGAAAGATGGGCAGAGCTTTGGATGGTTGCTGATTTTTCTGTTGATTCTGTCACTTCTAATAACTGTGACTACAGAGAAAGTACAAAGAGAGCTCATAGAAAAAAAAACACAACAAAGCAGATAGAGCCAGATTCCTCAAAAGTATTTTATTTTTCTTCTGTTTTACTCCCACAGTTTTGCACAGATAGAGAAGGATATTGGGCAGCAATCCATACACATAAGCAATGTGTTTGTTCACAGATACGTATAATTCCATTTGAGAATTACGATTGTGTAAGTGCAGTACTATATATAGAGACTGAGAAAATCTTTAAAAAGTTCAAAACCAGATACTAATGATTTAAAAAGCAGAGAAGTAGAGTATAGCTATGGAAGACCATGTGACAGCTGTCCCACAACATTCTGCCACAACTGTGGAAAACAAGTCAGGGCTGGACCCTGGTGTCTGGTGCTGGTGTTCAGGTTGTGTAACTAAAATGATAAATTAGAGATGGACAAGATTTACAAGATTAGGATTACTTCTTCAAAGGCAACCTGTTAGTTTGCTATTCAGCATATTTTCTTGTTTCAAATTATTTAAGTCCCAGATAAGCCTCAGTAGAACCAATTGGTTGCAACGAATTCAGTGCCGTGGAATCACCCATCTCAACCTTTGCCTCTCAGCAATAGCTGAGACACATGCAGAGAAGGAAGCTGATTGCAGTTGTTGAGGGAACAGTCTTTGAGTGTGAAAGGCTATCTTAATAAAATCCCGTATCATGAAAACACATTTCTAGCTATGTAATGAATTTTTTTCTGCTAAAATTCCAACACGTTTTTCTGATTTTGTAGTCATGATTTTGAAATCCTTTTTTTTTCCTGATATATTTAAAGAGTTATGTCATTTTCTTTCTGCTCTCCTGTTAAAAGTTACATTTTAATAATACATATTATCCTTTACGTATATTAGTTACAAATAATAAGTACGTGTTATTTTCCATTATATAATTTACTGTTATCCAAGCAGAAGTGCACAACAAAATATTTAATTACTTGTATGGGAAATGTCAAGTTTTCTGATTGGGAATGAAAATAAAAAGGATGTCCCACAGGACTGAAATTTTGTTTTGTCTTCATCCCTAGGTAATACAGCTTTTTTATCTTCTCTTGTCATACAGTACTTAATTGGAGAAAACCTTGACAGTCCTGGGCTGCATTCTGCTGGCTTGTTATTTCAGAATTTCATGGCAGTGAGCAATATGCTTTCATAAATCAATGATCTTATGGATATTCTTTTTTAATACATAAACCAAAGTTTTATTATTTATCTGTGTTATTCGTAGTACTGTAAACACAGGATTTTAAAAATATTTGCTTTGTTGTGTTATAATCCAGCAAGGATCTTAGAAATTACATTCGGTGCTTAAAAGTGAGCCTTCACTATGACACAGATGACTTTGTTTAGGTAATTTCAAACGACAGAAGCATTTCCTAGTCTCATTAGACTGAGATAATGAATAGAGTTTTACATTATAGAGAGGCAATTCTGTGAGTTGCAGCCCATGTTTTCTAACAGAGCTGTTTCTCCAGCAATAGCCTGGGAAATAGGAACCCCTAGAGGTTAAATATTTAAGAATAGTTTGCAAAACTTTCCTTTTCCAGTTGATAATCTGTGTATCCAACCAACCACATTAAAAGAAAATTTCATTACTGTATATTTTACTATTTGGAGGAATGGTATATTTTCTTTCATAACAAAATTATTGTTCTTTTTCTCATGCTACCCATGCATTTTAATATCCATAACATCGTCTTTACACGAAGAATTCAGTTAAGATATAAATACTGCATGTTTTGCCCTTTTATTAAATGAATTCCTTCTCTTCAG
Seq C2 exon
CCTTATAATGCCTTCTTTGCTGCAGTAAAATGGATTATGACAGAGCTTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400:ENSGALT00000036263:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]