RnoINT0028168 @ rn6
Intron Retention
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:4916936-4919838:-
Coord C1 exon
chr16:4919763-4919838
Coord A exon
chr16:4916989-4919762
Coord C2 exon
chr16:4916936-4916988
Length
2774 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
GAGTGAATTCTTCCCTTCAGCCC
3' ss Score
5.51
Exon sequences
Seq C1 exon
AATAACCTTGTATGACTACCAAGCCATGTGTAGAGCCAACAAGGAGAGTAGTGACAGTGCCCACGGACTCCTGGAC
Seq A exon
GTAAGTATAGCCTATGACCCAGGGAATGGCTGGCTACCTCTGTGGCCTTCAGGACCCATGGCTCAGACTTTAGGGTAATCAATTGTACCTTACTCAAAACCAAAAAATGTTTAAAGGTATTTCCTGACCTGACTCACTATGAACTGTTTCTGTTTAAACCCAGATCCAGTGATTATATAAGTTAAAAATCAGGCCAAGGTCTTAGATGGATTAATAAACAGTTCCCTTTTTATAGACAAGGGGGGGGGGGAGCTTCACTGTTACACAAGGGCATTAAATGCATTTGGTTTGTTTGACAGAAATTGTCCTTCTGAGAGAGTTGATGAGATAGCTCAGTCACTATGCTTCCTTCCACATAACCTTGAGGAGCTGAGTTTAGGTCCCCAACATGGCCGTGTATATCTGTAAGCTCAGAGCAGGTGCAACATGAAGTCAAGAGAATTCCCAGTACAGTCTAGCTGGCCTGAATCCTTCCACTTCAAGATCTTTGAGAGACTCTGTCTCAAAAATCAAGGTGAAATGCAACAGAGGAAGAGACATCTGTCATTTCCTTCTGACCTCTGAATAGACAGGCACACACACAACTGAGTACTTCTCACACACACATGCACTCACACGCAGGAAAATACCTTCCTTTTGGTTTTCAATAGTACTTTCAGGCCAAGGGAATAGGTGGGTTCCTCTGTTATTCTCAGTGCTCTCTACCTGGGAGCTGCTTCACTGAAGGAAGATTTTACAACCTAGGATCAAGGCATGCAATGTTATGTCCTTAGAAACCAGCTCCTGCCTGTCAGAAATCAACTGTTCTCAGTTTGAGAATGTAATTTGCAATGTACAGAAAATATCAATTTGAGCCTCAATTACCTGAAAACTCAGACACTTTTTTCCTTCTTTAAGTTATAACTCACAATAGCCCACAGATGTATACAAGTCTAACTCTTGAAATGTGATTTTGGAAATACTAAAAGCCAACCAAAATGTTCACTTAAAGTACAAGATTTTAAAGCCATCTTGTTGAACCTTGGCAGCTTCTGTGAGACCCAAGACCTCGGTGTATGTGTTTGGTGGGGAGTGGGTATCTAAGAGCTGAATGGTTAACATGATTCTTCTACACAGAATGAGCCAGAAAGGGACTGAGATACAAAGTTTCTGAGAGACAGCTGAGAAGTTTGACTTTATAGAAAACACCACTTAATGGAAACTTTGGAAGAAACATCACTTGGAATGGGGGCTTTTTGTTTCCAATCTGGCTTTTCCTGCACTTAGTGTGACTATTTACAGATTTGAAATGTCCCAAGACAGGTTTTCTTCATTCCTTTTAAAACGTCTCTGGTGAGGCAGTGCAAGCTACACAGCCTTGGAGACTCCTCAGTCTGTCCTCTCAGCTCCACCTCTGCCGTCCATTCCTTCCAGAACAAAGACACTGAATCGGCCGGTGGTCTAACTCCTTGAGTCTTTCTGGAGCTCGGGGGAAGTGATGGATTTAATATCATAACACCTAATGACCAGAGGATGGGGATTTGAGGCATTTGGTTTTAAGAAATCGTTGCAGTTAATATCTTTCTCTGACCCTAAGCTTAGAGGAAGAGAGCCCCCCCTGGTTCAGGGACTTGATGTTGAAAACCTTACTCAAATCAAAGCAAAAGATAAACAGCCTTGCAAAGCAGGGCGGGCTGGGAATAAGCCCAATGGGTTTCATTTGTTTGTTTGTTTATGCTGCTCTCACTGCTTTCTGGCCTGAGACAGGAACCTTTCAGCAACAGTTAGGACACTATAAATTTGTTCTTGTTTTATTTAAAAAGGGATAATTTCTCCATTCCCAGTTCTGGTTCTTACAATTAAAATGCACAGAGAGGGGGATTAAGCAGCTGTGGCCTCAGAAACCAAGAGCTGGCACACACTTTCCTAATGGCAGCCGCAAAAGGTGCTGAGGATTTTCTGGACCTGCTGTCTGGAGTCTAGCTCTCTGCCAGTGACATCGTCTGCCTCACAAAGCTGCACACCACTTACATATCTGGCATTCCTAGGTACAAAGAGCCAACTGAGGGGGACATGGTATTTTCCAGAATTCAGGAAATTGAATTATCCACATAGGAAATATCACAGAGTAAACAATCCGACTGCTTTTTTTAATTAAAATATTCTGAAATAAAGATTAGGCTGTCAATGCCTTCTTTTATAGCATACAGGGGATTTTCTGCGGGGATAAAATCACATGTTCATATGGTTATCATTTTTTCAAGTCCAAATATGTAAGTGCGAGAAAGGGCAGCCCAAATCCTACATAATTCATGGAAGGCATTAAAATCAAGTGTGTTCAATTTGTGCTTCTCTCAATGAACAGCACACAGCGATGGAGAACTGCGAGTCACCTTTCCAAAGGGGAACAGTGCGAATTACCATTTGAAATTAGTTACATGATTCCAGCCCCTCAGTATCAGGCTGCGAAATATTAGCCCCTAGAGGGTAAAGGTTTAAGCATCGTTTGTTGAACTTCCTCCTTCCTCCCAGTGATAACCCTTGTATTAGATCATGTTTATTTTACTTGTAAATCACAGCTCACTACAGGGGAGCTCAAAGTTTGAAAATGTTAGTTTTGGGATACAGTATCTAAGCATTTTCTTCCTTTAGCTAGACCCTCCCTGGTCTAGCTGGTTTTTAACATGATATCCATCTCCCTAGAAGAATAACATTGTCTCTATGTAAAGCCTTAAGTCAAACTACAAACATCTTATGTAATCCATTGTTTTAACGGAGTGAATTCTTCCCTTCAG
Seq C2 exon
CCCTATAAGGCCTTCCTCTCTGCAGCCAAGTGGATAGTGACGGAACTTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287:ENSRNOT00000048043:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]