GgaINT0022434 @ galGal3
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2949304-2949618:-
Coord C1 exon
chr12:2949522-2949618
Coord A exon
chr12:2949421-2949521
Coord C2 exon
chr12:2949304-2949420
Length
101 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ACTCAGGGCATCTCTGTCAGGTG
3' ss Score
3.29
Exon sequences
Seq C1 exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
Seq A exon
GTGAGTTGTTGCCTTCAGGGTCCTCTGGGGTGCTGGGCACTGGAACTGGGACTGGTCCCCATGGCTTGGGGTGGTTGTGGCACTCAGGGCATCTCTGTCAG
Seq C2 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.1=100)
A:
NA
C2:
PF0140314=Sema=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCCTTCAGCTTGGAC
R:
CAGGCGCTGGTCCACCTC
Band lengths:
203-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]