GgaINT0022434 @ galGal4
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3121772-3122086:-
Coord C1 exon
chr12:3121990-3122086
Coord A exon
chr12:3121889-3121989
Coord C2 exon
chr12:3121772-3121888
Length
101 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ACTCAGGGCATCTCTGTCAGGTG
3' ss Score
3.29
Exon sequences
Seq C1 exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
Seq A exon
GTGAGTTGTTGCCTTCAGGGTCCTCTGGGGTGCTGGGCACTGGAACTGGGACTGGTCCCCATGGCTTGGGGTGGTTGTGGCACTCAGGGCATCTCTGTCAG
Seq C2 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.2=100)
A:
NA
C2:
PF0140314=Sema=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCCTTCAGCTTGGAC
R:
CAGGCGCTGGTCCACCTC
Band lengths:
203-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]