RnoINT0132906 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7307175-7307495:+
Coord C1 exon
chr16:7307175-7307265
Coord A exon
chr16:7307266-7307378
Coord C2 exon
chr16:7307379-7307495
Length
113 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CTGACTCTGGCCCCTTCTAGGTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CATGTGCTCCACTTGGATCCTAGCAGCATCGAAAATGGAAGGGGGCGTTGCCCACACGAGCCCAGCCGTCCCTTCGCCAGTACCTTTGTAG
Seq A exon
GTGGGTGATACCAAGCCAGAGTGCCAGGAGCGTAGGAGTTGATCCTTAGTTCCGGGTAGGGATGGCGCTGGTTGCTAAGCCTGGCCCTCTCTCCTGACTCTGGCCCCTTCTAG
Seq C2 exon
GTGGGGAGCTGTACACGGGCCTCACTGCTGATTTCCTCGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
NA
C2:
PF0140314=Sema=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCACTTGGATCCTAGCA
R:
CATGTAGGAGGCTCTGGTCAGA
Band lengths:
204-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]