HsaINT0147312 @ hg38
Intron Retention
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52441574-52441909:-
Coord C1 exon
chr3:52441819-52441909
Coord A exon
chr3:52441691-52441818
Coord C2 exon
chr3:52441574-52441690
Length
128 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
TTCCCCAACCCCCACCCCAGACG
3' ss Score
5.19
Exon sequences
Seq C1 exon
CATGTGCTCCACCTGGAGCCTGGCAGTGTGGAAAGTGGCCGGGGGCGGTGCCCTCACGAGCCCAGCCGTCCCTTTGCCAGCACCTTCATAG
Seq A exon
GTGGGTGATGCCCAGGCCAGGGTGAGAACAGGGAGGGTGGCAGCTGGCCTATGTCACTGGGAAGGGAGGGACCCGGCTGCTGGGCCTGGGCCTCCTCCCCTGACTCTGTTCCCCAACCCCCACCCCAG
Seq C2 exon
ACGGGGAGCTGTACACGGGTCTCACTGCTGACTTCCTGGGGCGAGAGGCCATGATCTTCCGAAGTGGAGGTCCTCGGCCAGCTCTGCGTTCCGACTCTGACCAGAGTCTCTTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319:ENST00000231721:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
NA
C2:
PF0140314=Sema=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTGGCAGTGTGGAAA
R:
CGTGCAAGAGACTCTGGTCAG
Band lengths:
194-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development