GgaINT0023628 @ galGal3
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
NA
Coordinates
chr11:10439683-10441655:+
Coord C1 exon
chr11:10439683-10439713
Coord A exon
chr11:10439714-10441536
Coord C2 exon
chr11:10441537-10441655
Length
1823 bp
Sequences
Splice sites
5' ss Seq
CAAGTACAG
5' ss Score
0.24
3' ss Seq
AATGTTGTATTTTTTTTTATGCA
3' ss Score
1.11
Exon sequences
Seq C1 exon
TTCTGGCATTAATGATGGAAAATCCATTCAA
Seq A exon
GTACAGCATGCAGTAGCTCAACCTTCATAAAACTCCTGCTCTACAGTAGATCTGCAGCCCAGTGTCTTTGTGTTCATCGGAGTTCTGCATAAATGTGCATTAATAAAAGAATAACTACAGTCTCCAAGGGTAAAATTAAGAATGTTTTGATAATTTGCATTAAATATTTTTTAAACAGCAATAAATTTTAAAAAGCTATATGAGAATATAGTAGGAAAAATATAGATACATTTTGCTTTAAGAACATTAATGTTGAACTGCAAAGACTGCACGCTAAGTATTACTTCCATATTACTTTTTTATTTAAATGCCAGGTGAGCGAGGAATTTGGCAATGTTAAATTTGAATTAAAACTTAAGAAGTATTTTTATTTATCTTTGTACACACAGGATTATTAAATTTTGGTTCAGACTATCTGTGCATTCTGATTGCTATTTTATTTTATATGGCATATTATGTATTCTTCAGAATAACCCTCTGGTCTACTTGCCCTACATAATTATTTCAAATGTTGAATCAAAAATGCTAATTTTTGGAGTAGCTCTTCACAATACCACGTGATGGTTTGTGCTGGAGATGTTCTTCATAGGAACATGAGGAGCTATGGAAGTTCTTGCAAGATATGAGCTTTACTTTGTGTCCCATCCGTTACACAATAAACCATATGTTTATTTTGGTCTTGGGATGCACTTTAAAGTACCCATTAGAGAAATTCTCCAGGGGTCTGTATCAGTTCCTTCAAAGCTCCTGTACATAACTGAGATGAATGGCTTAACTGCTCACTCAGCTAATAGCAATTTGTATAACAGTGAAGTGAACTTGAACACCTGACTTGCAACTGGAAAAGTAGAATTCTAAAACTTAGGTTACTGAACAGGTTAGATGCAGAAAGGAAGCCCTTAGATGTTAATATGATGCTCCTTTTGACAGTAGTGCTTATTTAAATAGCTCCAATCTGTTGTTCCTTTGTATTTCTGCTATTATCTCATTTGAGGAGTGTGTGAAGGCTGCACGATTGGCTGGAGTGGGAAGCAGACCCGTATAAAGACACCATCCCTGCTCCTAAACATTAATATTTCAACCCAGATAAGCTACATTATTCAGTGAGGGAGCAGGAATAGGACTGGTAAAGTCTACGAAGTCATGTCCCAAAAATATTCAAACTGTGCACTTGCGGGCACACATTTTCCTGTGTTAAATTAGTCATTAGCCTTTGTCTCTGCAACCATTAATTTTTCAAGAGTCTCCTTCATTCTGGAAGAAAAAACGATTTTTATTGCAATTGCTTTTCAGTAATTTGGAGAAGTTGCAAATTATTTTTTCATACATCTGGTCAGTATCTTTTTTTTTCTTTTTTTTTTTTTTTAAGTTATCTCAGATCCTTCTAAAAGTGGATGATAAAAAGAGTCTGAGTGCTTCACGAGACCATTTGCTTGTCTTTACTATATTTGCCAGTTAGAAACTTATCCTTTATCAGTGCCCATCTTTTTTTCTTCCTTTGATTCATTCTCTCACATTTTCCCAGCTTTTGCTGTAGCCCAGGATTTTCACCCCATTGGAAGAAGAATGGAAGTGTTCATAGAGCGTAAGAATGGGTCTTCCTAAAAATTTAATAATTCCAGGAAATGGTAGGGCAAATGCAGAACAGCATGGTAAACAAAATACACCTTTATTATCTCTATGTCCATTGCCAGTTTGCTCCAGTAAAGTATTACCTTTAAAGTTAATTTACGTTTCATAATTTTCAGCTGTGCTGAAATTATCATCTGAGAACTTCATACAATGCTGGATGCAAATCTTTAAAATGTTGTATTTTTTTTTAT
Seq C2 exon
GCAGGAAGTAAGTCTTCAGTTCAGAAACTGTACAGATGTGATGTATGTGACTACACCAGCACAACTTACGTTGGCGTACGAAATCACAGACGAATCCATAACTCTGATAAGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(57.7=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]