HsaINT0187444 @ hg19
Intron Retention
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32847522-32851524:+
Coord C1 exon
chr19:32847522-32847639
Coord A exon
chr19:32847640-32851409
Coord C2 exon
chr19:32851410-32851524
Length
3770 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
CTCTGAAATACCTTGTCTAGGGA
3' ss Score
4.62
Exon sequences
Seq C1 exon
AGTCAATTGAGGAACCATGAGAGAGAACAGCACAGTCTTCCAGATACCTTGTCAATAGCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG
Seq A exon
GTATCTATGTATTTTGTTATGCAGGCTGCAGTGACTTGCACATGACATAAAAGTGCCCTTAGTTGTCATGGTTGGTTATTTTCAGGGCAAAAGCCTATATTCTCCTCCATTTTTGTACCATGGATGTGAGTGAATCTGATCTCTGTTTCTGAGGAAATGCCAAGTACTGAATGAAGCAGATGATTACTAGGTCCTAGGTGAGAAGCCCTAGATAGTAAGGATTCATCTTCAGTTGAAACTTAAGAGCCCCTTAGAAGGTGATGTACCAGCAAGCCAGAAAAGCAAGCCAGAAAAGCTACAACATGGAAAACAGGCCTCCCCTCCCTCTCTCGGCACCAGTTGACCTACTGAGAACAGAGCTTTTGCAGATGGTAGGCCCCCACCCCAAACTTTAACTGGGGCTCCCCGCTGTGATCTTATTCTTACCCAAGTATGACTGCCAGATTTCATCTGCATTATTAAAAAAAAAAAAGCACACACACAGACACACAAGATCTTTTTATGTACTAGTTAAGTAGCAGTCAACCGAGTTTCTGGTAATAAGAATATTAGAATCAAAAGATTTAATTAGAGCTCCATGAAAAGGCGGATGCCACATCCGGAGAATTAAGGATAAAGTGTACTAAGCTGTGCCGCTTTGGTTCAGCTCACTTAAATTGATATACTTTAAATGTCTCCAGTGTGGCACATAATGTTTATGGGAGATAAGACATATTGGGGTGACTTTCCCTTTTAGATTTGCTAAGAATTAAAGTTAGAAACGACTACAGAGTGAAATGTTTTACCATAATGTTTCATTAAATTATACCCCAGAAAGCATAACTGATTCTAGAATGCTTCTGAAAGAACTGATTTTGACACCACTGTAGCACCAAAATTCTCATGTCAAACAGATGTCATCCCTGTAAAACTCTCTGAAACAAAAGGAGTTTATGATATAGCATCTGTTTTTGCAGTAGATGGCTGAGCTAAAACAGTTTTGTTTCCTTTTTACAAAATAGCCCTAAATGCCTCCTTTTATTTTAATTCATTATGTTTCCATATCCCCTTTAAAGGAGACATTAAAACGTCTGATATGATTGGACCATAAATCCCTAATGAAAGGATGAAGTAAATACTACTCAGTAGCACCACCTGCAGTTAATATCAGTGTTGGAAGATGTCTTTTTTAGCACCGTCCTAAAAAGCAAACATTTCAAACTGTCCAAATGAGTTAACATTAAAATTCACAATTTTAATAAAAAGATTAAAGTGTCAGCTCAAAATTAAAATAACCACTTCAGACTTTACAGTATTAATGAATGTTTACTAGATTTTATGTTGCAGCATCTTTTCTTTGTGGCTCATGCTTTTTTTTTAGGGTTACATGCATGGATTTTTAAATTGCCTGCCATGCCTCTTTTCCTCCACCTGGCTCCATTTGCTTTTTTCTCTCAGTACTGTAGCAGTTCAAATGGCTGCATACTTATACCTGGATGGGTACTTTATTAACTCAATATTAGATATTTTGAAATCTGGTTGTCAGGCCAAAGAAAAAATTTTTAGCTCACAAATAAGGTAATAATAATTCATGCTTTGTTAAAACTTCTTTACCTATTTAGTAAACTTGTTAAACAAGAAGAGAGATTTGTGCCTCTGTGATCCTCAGTCTCTGCCATTCAGATAGCACAGATACCTTAGGGCATGTTTCAGCTTAACATTTGCTTGGCCAAAAGGCATGGCCTGCCTGTCTTGAGCTAGATACTGTGTTAGGTGCTGGGAGTACAGTGAAAGGCATCACTGCCCTTCAGGAATCCAACTCAGTGAAGAAGACAGAACGAGGCTGATGGGTATGTCAGCAGATACCGCAGGAGCTCAAATAGAGCCGCAAGCAAAGCCCTTTCGTATGGTGTTACTCCATGAAACCTAATTAAATTGTTTTTTATTGGAAACCTATAATTTGCCAAGCGCTGGGGATTCAGTCTAAACAAAACAAGCAGATCCTTATCCTCAGGGAATAGACAGCTTAGTGGCAGGGCAGAGATTTTACCCAGACATGCAGGTAAAGTACAGACTTTGCTAAAGGAAAAATATAGGACTTACTAAACTATGCTGTGAGGTTCTAGCATTTCCAATTTGTAGATGAGAAAACTGAGACTTCAAGAGGCAAAATAATTTACCCATGATCATACTGGTAGAAAGTGGCAGAGCGAGGACTAAGCCCAAGTTTTTGAACTTTAAATCCAATATTCTTTCCATTGGAAACAGTTGCTTGAAGTAGCACAGGCTCTCATTCTGTGCTATATTAAGTTTTTCCATCTGTCAGTTTTATTAGTTGTCATTGATCTGTAATATTTCTCACACAAAACCATTATCCAATATTTCACACTTCATTTTTTAGGGTTTTTTTAAAACTGTATTTGGAACAGTGCCATTTATAATCAAGTCCAAGTTTTTAACCTACCAATTAAGAGCAATACTTAGATTATAATTATGATTAGTGTGTATATTAACGTTATAGATTTATACCAGGAAATTAGGACATTTTGTTCTGCTTGGCAGTAGTTATTAGCAAAAGAAAATTTCAATTTTAGAAACCGTAAATTTAACTTAAGGATTTTCTTTGTTGAAATTTCAGTGTGGGTTTTCCTTTGTATAATACCACGGATTTTACTTTTATGCGGTGTATACAGGTGTTCTACCTAAGCTTTCTTCCTGCCAAGAGACACACAGTTCTTCCTGCTCTGCCTTTTTCATGAGCTTCCATGCTTGCTTTGTTTCTGAATATAAAGCAGAGTGTGAATAGCCTGTGGACTGTATGCTGACAGACAAGTACATGAAGCGTTGAATATCTTCAAGAAATCGTTTTATATGATCAAGTCACTCAACTCGTGTTGACATAAGCTTACCCCAACTTGAATTACTCAGCCCTGTTGTTGCAGAGTGAGTTTAGTAACATGGCTACTTTTCGTTGGATCCATGTCTCCTGCGTTTCGGAGAGCTGCATATTCATGTCAGTCATAACCTTTGTCCCTGTAACCTGTCAGTTAACTAGAAAGAATTATACATTGCATAGCACTTAAAAATTTGCGGCCGCTTTTCCTTTCTTGTTGCGTTGGTAGCTGACGTTTAGTGGTAAACAAAGAAAATGCACTGGGTGAAAAGGCCTTAGGCTTTTTTTTTGTAGGGTGAGAGTGGGGGAGAGATCTCTTGCTCTGTTGCCCAGGCTGGTCTCCAGCTCCTGGCCTCCGGCAGTCCTCCCACCTCAGCCTCCCAGAGTACTAGGATTATGGGCATGAGCCACCACACCTAGCCAGGCTTTTTATATTGAGTTGGTTATATATGCTTCATAGCCACACTTTATAATATTGGAGTATAGTATTAAATTACAGCTTGTTGTCAAGTCAGTGTTTCTGTAAGACAGTATATCCAATATTGGTTAGAGTAACACCTATTTGGTGATACAGATCAACAGGGTGTCTCTGATTAATTTAGCTCCTACATAGCCAGAAGCAAGTTCATTATGACTTAGAATATTGTACATGGTTATGCAGGAATCATCCCAACCTATCTGTGTTTATAGGTCAGATGATGTTCAGTTTATATCTGCTGATAGTGTATATGCAGGAAAACCTATAAAACCACTTCAGACTTGTTAAAACAGTGAGAAAGCCGTGATTGAAATATTAATACAACTGTGTGGTATAAATTTTCATTTACAATGGAATGTAAATGCTGTCATTTGAATCTTGTCAAAGCCTGCTACTAAAACTCTGAAATACCTTGTCTAG
Seq C2 exon
GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-ZNF507:NM_014910:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(41.7=25.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)