GgaINT1030593 @ galGal4
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9241394-9245697:+
Coord C1 exon
chr11:9241394-9241499
Coord A exon
chr11:9241500-9245582
Coord C2 exon
chr11:9245583-9245697
Length
4083 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTGTATTTTTTTTTATGCAGGAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
AGCCAACTGCGAAATCATGAGAGAGAGCAACACGGTCTTCCAGATATCTTTTCAACATCCACGTCCAACAAACTAACAGTTTCCAGTGAAGTAGATGAAAGAGAAG
Seq A exon
GTACTGTCTATATTGTCACTTGAAATAATAAAAAGTTGTCTGTAAAACTGCTTGTTTGCTGTACTTGTAAGCTTACTGTTTTTGAGATCTCTTTTGGGCCAAAATGTTTTCATGTCTATTCCTAACCTAAATGCATGTAAATGTGCAAACTTACCGTAAACGATCCATTGTGAGATCTCTTATGGACATTTGTTAGTAGGCAGGACATTTTTTGCATGTGTAATTAGATCCCATATTTCTTCTTTTTGCAAAAACAATTAAAAAACAGAGAACTGGTATGGATTATTACTCTGCTATTTTAAGGGAAAAAAACACTTTTTTTCCTTTCTTCAACAGCTACAGTATTTGTCAAATAGCCTGAAGTAAACAGAGGCAGCCTTTTTTTAAGCTCACTATGATAACATAATCGATATCAGCATATATATACAACGCTGTCCATTCTGTGATTGGAAATTTCTCTTTAAATTATGAAACGTCCAAAGTTTATTTTAGCTCTAGAGAGGCAAATGTAAGGCATTTGAAAAACTATCTATAGTCGTTACCGGGGTAACAATAGGGCATTTTCTAAATGTTTGGTTACCTATGTAATTTAATCATGTTTTTTCTCTGAAGGAAAACCAAACACACTTGATGTGTAAAGATAGTGAAATAGGGCGAAAACAGCCAATACTTGAAGTTTAGGGAAGATGTAGTTTTAAAATCCTTTGGGTATCCTGTGATCTTAAAATCCTTTGAGTATCTAGGAGGACCAATATTTAATATTATATTTTCAGTGCATCCTCTTCTCTGGTGAGTTAGTTGCTGAACATATTTACAACACTTCTTTAGGCAAGAGTGTAATTTTTAGTGCTTGGCAATTTTAGAGCGCTGTGGGAAAACGCAGTAATTATATCACCTCTCAACAACTGTGAGCCAAAATATTTCACATTTTGTGTACATAGCTCTTTTCTGTCCCGCCTATGGTCTCTATTTAGATAGCAAAATGTGTACTGTAATAGTGCATAGATTGCAGATGGAAACTCTGGGTTCTACTCTTGCCTTGCTGACATTAGCATAGACAGTGGAGCAAAAAGATACTAACCAGCATGAGGCAGGTTGGATGGCCTGAACCACTAACAGTTTGTCCAAAGCAATATGGCACATGTCAGAAGAAAGTGAGATCCGTAACTCTCGCCTTGCATTCTGTTAGCTCACACTGCATCTTTTTTCTGGCTTTCAGTATACAAGTTAGAAAACGAAGATGGCTTTGGAAGATACTACATTTTAAAAAGGTGTTAGATTTTATATCCTGACCTTGTAACTTAACTTCCTTGAAAGAGGAGCCTCTGTTCATGAGAACTTCCTGTTTTTAATTACTTTAGAGAATTTAAAAATATAGATTTTTGCTCATTACTTATAAAAGTGCTACATCCAGGCAATTTAATTGACTGTTCACCCCACATGAAATTTAGTAACGTGATTCGAATGAAAACAGTTCTCCTTTTAAAGTTGTATTAACTCATACTTTGGAATGCTTAAATTATTTCAGAACCAATTTATAATCAAATTGCAACACCACTGCAGTACAGCAATCTCTTGTCAAACAGATGTCATCCCTATAAAGCGACACAAAACAAAGAAGTTTATGGCATAGCATCTGTTTGTGTGAAAGATGCCTGAGCTGGAACAGTTTCATTTCTTGTTTATGAAATAGTTAGTCCTAAAAGTCTCTTTATTCATCATGGTTGTACAATAAATTAAAAGGGAGCATGGTGACACTGGATATGATCGGATTGTAAATGTCTAATAATGAAGGAATAGGGTAATAAGCAGAATTACAGGAACACCTGTTACTGTTGCAAGAATAAAGACCTGTGGTTTCCGTGCTCACTTTCAAGAGACCCGACGTCCTCAACCCAGAAAGCAAAAAAGCCCCTACAACCTCAAGAAATAAGCCATCAGAGGAGGCAGGGACAGAACTGCTGCTTCCTTTCAGCTAGAGATTATATGGTGTATTATAATTTATGGGCATTTTGTTGAAGGGATAAAACTAAAGTACTGATTGATATAAATAATTGCTCCTAAGTATATGCTACTGGATGGTTAGCCCCTTATAACTATGCACTAGATAATATGTTTGCATAACACTTTAAAAATCTCATTAGATACTGTTTGCTTTAAGCTTACTGCCCAATAAAATACCAAATTCATAACAGAAAATACATTTAGAAGCTGTTTTTCTAAAGTTCTGGCATTAATGATGGAAAATCCATTCAAGTACAGCATGCAGTAGCTCAACCTTCATAAAACTCCTGCTCTACAGTAGATCTGCAGCCCAGTGTCTTTGTGTTCATCGGAGTTCTGCATAAATGTGCATTAATAAAAGAATAACTACAGTCTCCAAGGGTAAAATTAAGAATGTTTTGATAATTTGCATTAAATATTTTTTAAACAGCAATAAATTTTAAAAAGCTATATGAGAATATAGTAGGAAAAATATAGATACATTTTGCTTTAAGAACATTAATGTTGAACTGCAAAGACTGCACGCTAAGTATTACTTCCATATTACTTTTTTATTTAAATGCCAGGTGAGCGAGGAATTTGGCAATGTTAAATTTGAATTAAAACTTAAGAAGTATTTTTATTTATCTTTGTACACACAGGATTATTAAATTTTGGTTCAGACTATCTGTGCATTCTGATTGCTATTTTATTTTATATGGCATATTATGTATTCTTCAGAATAACCCTCTGGTCTACTTGCCCTACATAATTATTTCAAATGTTGAATCAAAAATGCTAATTTTTGGAGTAGCTCTTCACAATACCACGTGATGGTTTGTGCTGGAGATGTTCTTCATAGGAACATGAGGAGCTATGGAAGTTCTTGCAAGATATGAGCTTTACTTTGTGTCCCATCCGTTACACAATAAACCATATGTTTATTTTGGTCTTGGGATGCACTTTAAAGTACCCATTAGAGAAATTCTCCAGGGGTCTGTATCAGTTCCTTCAAAGCTCCTGTACATAACTGAGATGAATGGCTTAACTGCTCACTCAGCTAATAGCAATTTGTATAACAGTGAAGTGAACTTGAACACCTGACTTGCAACTGGAAAAGTAGAATTCTAAAACTTAGGTTACTGAACAGGTTAGATGCAGAAAGGAAGCCCTTAGATGTTAATATGATGCTCCTTTTGACAGTAGTGCTTATTTAAATAGCTCCAATCTGTTGTTCCTTTGTATTTCTGCTATTATCTCATTTGAGGAGTGTGTGAAGGCTGCACGATTGGCTGGAGTGGGAAGCAGACCCGTATAAAGACACCATCCCTGCTCCTAAACATTAATATTTCAACCCAGATAAGCTACATTATTCAGTGAGGGAGCAGGAATAGGACTGGTAAAGTCTACGAAGTCATGTCCCAAAAATATTCAAACTGTGCACTTGCGGGCACACATTTTCCTGTGTTAAATTAGTCATTAGCCTTTGTCTCTGCAACCATTAATTTTTCAAGAGTCTCCTTCATTCTGGAAGAAAAAACGATTTTTATTGCAATTGCTTTTCAGTAATTTGGAGAAGTTGCAAATTATTTTTTCATACATCTGGTCAGTATCTTTTTTTTTCTTTTTTTTTTTTTTTAAGTTATCTCAGATCCTTCTAAAAGTGGATGATAAAAAGAGTCTGAGTGCTTCACGAGACCATTTGCTTGTCTTTACTATATTTGCCAGTTAGAAACTTATCCTTTATCAGTGCCCATCTTTTTTTCTTCCTTTGATTCATTCTCTCACATTTTCCCAGCTTTTGCTGTAGCCCAGGATTTTCACCCCATTGGAAGAAGAATGGAAGTGTTCATAGAGCGTAAGAATGGGTCTTCCTAAAAATTTAATAATTCCAGGAAATGGTAGGGCAAATGCAGAACAGCATGGTAAACAAAATACACCTTTATTATCTCTATGTCCATTGCCAGTTTGCTCCAGTAAAGTATTACCTTTAAAGTTAATTTACGTTTCATAATTTTCAGCTGTGCTGAAATTATCATCTGAGAACTTCATACAATGCTGGATGCAAATCTTTAAAATGTTGTATTTTTTTTTATGCAG
Seq C2 exon
GAAGTAAGTCTTCAGTTCAGAAACTGTACAGATGTGATGTATGTGACTACACCAGCACAACTTACGTTGGCGTACGAAATCACAGACGAATCCATAACTCTGATAAGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(41.7=27.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]