RnoINT0168293 @ rn6
Intron Retention
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92104921-92108943:-
Coord C1 exon
chr1:92108829-92108943
Coord A exon
chr1:92105036-92108828
Coord C2 exon
chr1:92104921-92105035
Length
3793 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
CTAAATCTCTTTCCTTGAAGGGA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCATGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCACCGATGGAAAGTGTGTTCAGGAAG
Seq A exon
GTATCTGCGTTTTCATTGGTGTCTATGAACTGCACAGGATGGTGGCTTTCATTAGGACATTTTTGTGAATGCATGTAATGTACTTTGATGTTACACACACACACACACACACACACACACACACACACCCCTTCATCCTCACTTGTGCCTTGTTAAATACAGACTGCACTGACAAGCTTATGAGGTGAAAACTCCCCTTCATTGTCATGGAACAGAGTGTATATCTCCCCTCTTCTATACTTCGGTGAGAATGAGTCTTCCCTTTGTTCCTAAGGAAATTTCAAGAATTGACTAGAGTACATTACATTCAGCTCTGAGTCAGAAGTAAGAAGTACTACATTCGTAAGGACTTGGCTAGGAACCCAGCAAATAGATCTTATGGGTAAAATTTGCAGGAGTTTATAAAGCCAGGCTACAGCAGAGACCCTTGGAAAGTAGTGGGCCAGCTAGCTGGGAAGGTGGGAGCTGGCACAGAAGGCAAGCCTCCGCCCCCTCTCCAGCTCCGAATGACCTGCCTGCTGAGGCACGGCTTTTGCAGATGGCAACCCCCACCTCAAACTTTAACTGAGGCTTCCTGCTGTGAACTTACTCCTCTCCAAGTCTGACTCCAGACTTCATCTGCATTATTTAAACACATGCAGGAACCTTTTATGTACTTGTTAGGTACTAGTCGGCTGGGTATCTGGTAACAGGAATATTAGAATCAAAAGATTTAATTAGAGTTCCATGAAAAGGCGGATGCCACATCCAGAGAATGAGGGATTGAGTGTAATAAGCTGTGCTTCCTGGCTTTGGTTCACGTAAATTGATATGCTTTAAATGTCTCCAGTGTGGTACATAGTGTTTATGGGAAATAAAACATATTGGGGTGACTTTCCTTTTTAGATTTCCTAAGAATTAAAGTTAGAAACAACTGCAGAGTAAAATGTTTTACCATAATGTCTCATTAAATTATACCCCAGAAAGCATAACTGATTCCAGAATGTTTCTGAAGGAACTGATTTTGACACCACTGTAGCACCAGAATCCCCTTGTCAAACAGATGCCATCCCCGTAAAACCATCCCAAACAAAAGGAGTTTATGACATGGCATCTGCTTCGGAGGTGGATGGCTGAGCGAAAACAGTTTTGTTTCCTTTCTACAGAATAGCCCTGAATGCCTCTTTTTATTTTAATTCATTATGTTTCCATATCCCTTCTAAAGGAGACATTAAGCATTAGACATGATTGGCCCGTAAATCCTAATGAGGGAATAAAGTGTGTGCGACTCAGTAGCGCCACCTGCAGTTGACTCCAGCAGCATCGAAAGCAAGGCCTTTTAGTACTGTTTTTTAGCAGATTCAGTGAAGACATCAACATGGACACTCGAGAGGCCCAGTGTTCGCACTTTGCTCTGCTCTCCAGTTTTTCTTTGTGACTTACACACTTGCTCCTGCGGTTAATGATGTGTAGATTTAACTTGCATACCACGATCATCTTGGGTTCTGGTTTGGTTTAGGAGTTTTGTTTTTGTTTTATTTACTTATTGCAGTGCTAGTGGTAGGTGCGTGCTGAGTGAGCAGTCTTCAACTGAGCTTCCCTGCCCCTCCATGATTTTAGTTTTAACCCCACTTAGCTGCATTTGCTGTTCTATCATGGTTTAGCAGGAGTAGTTGATCTCCTGCATACTCACACCTGCATGTTAACTTGATTAATTCTATATGGTTGTGATTCCTGTTTTGTTAACAGTTCTCTTAACTATTCTGTAAACTTATTAGACAAGAAGGGAAATCCATGACTGTGGCTGCAGTCTTAGCTGTTGCTGTAGCACGGACGCCAGCGTGCTTTCAGTACAGAGAACTGGTGTAACTGCGGCAGAAACTCGTTCAGGCTAAAGGCACGGCACACCTATGTTGAGGGGGTTCTCCTGCCAGGTTCTGGGAGCACAGTGAAGGGTGTCACTGCCCTTGTGAAACTGGAAGTAGACCAATGGATATGATGTCAGCAAGTGTCCTGGCATGGCACTTCTGGACTTCCAGACAGTGTCTCTTTGTGAAGTTTAAATTGATCTGTCATGTGTGCAGCCCTAGGTTTTAATGCCAGCACTGCAGAGACTGGCTGGAAGTGTGCAGAAAGAGCACAAGGCTCATTCAGCCATTGAGAAGGTCCTCTACATCCCATTCTGTAGAAAGGGCAAATGAGGCCTCGAGAGCACATAGTTTGCTTATTCTCACACCAGTGGTCAAGCAGAAATTAGGTCCAAGTTGTTGAACTTTAAATCCAGTCTTGATTCTATTGGAAACATTTGTTTGAAGTAGCACGGTCTCTCATTCTGTGCTATATTAGGCTTTTCCATCTGTCAGTTTTATTAGTTGTCATTGATCTGTAATATTTCTCACACAAAAAAATTATCCAATATTTCACACCTCATTTTTTTTCAAAGCTATATTTGGAACAATGCCATTTATAATCACGTCCAAGTTTTTAACCTACCAATTAAGAGCAATGCTTAGATTGTAATTATGATTAGTGTATTAATGTTATAGATTTACACCAGGAAATTGGGACATTTTGTCCTGCCTGGCAGCACTTATTAACCAAAGAAAATTTCAATTTTAGAAAGCTTAAATTTAACTTGAAAATTTTCTTTGTTGAAATTGCACCATGGGCTTTCTTTTCTTCTGCGATGTTACTTAGATCCTGTGTGCACTCCTTCCCACCTAGGCTTGCTTCGTGGCTTGCTTCCTTTTCAGACAGAAAAACAGCTCTTTCCGCTCTGCCTAATCCTTGAGCGTCCATGCTTACCTACTGCCTAACCACACGGTGAGGGTGCTCTGGGAACCCGCACACAAAGCACAGGCTGTCGTCCAGGGTCACTGCTTATGATGGAGCCCTCATTTGCAGAATGAGCTAGTAGTGGGGCCTGTATCACTGGACTCCGGTTTACTGCACATGAGGGAAGCAATGTATTCAGTCTTTCTCTCTCCCCCACCAACCCATCGCCCCATTAAGTGTGAGTATGCTGAATTGTAGAGCTCTTCAGAGTTGGCGATTTCTTTCTCCTTAGTTTAACTAATGGCTGACATTAACCAGTAAACCAAGCAAACCTACGTGGTAAAATCCTCGGAGTTTTTGTTTGTAGCTTGCTGTGTATGACTCATGGCCACAGTTTATTTTTATTGTGTGTAGATCACTGTTTTGCTCTATGAATGTATGTATGTGTACTACATGAGTGCAGTGCCCATAGAAGCAAGAAAAAGCCATGGATCCCTAGAACTCAGGTCATAGACAGGTGAGAGCCACCGTGTAGGTACTTGGAACAAAACCTGGGTCTCTTGCAAAACCGGCCAGTGCTTTTGGCTACTGAGCTATCTCTCCAGCCTCTAACAATAATTGATAATACTTTAGTATTTTAGCTTGTTGTCAAATAAATGTTTAAGACACTGTGACCATTATTGATTAAAATAACACCTTTCAAGTTCACAGTGTATCTTGGTTAATTTAGCTACTAAATTAGCAGTCAGCACAACAGCTGAGGGCAAGTCCATTCTACCTAAAACCTGGAACATGGTTACACAGAACCAGCCCAACCTGCCCATGTTTACAGGTCAGATGATGCGGTGTTGAGTTCATGCTTACTGATGGTCTGAGTGCAAGAAAATCTAGGAAACTGCTTAAAATGTGTTAATTATGCTGTGAGAGAGCCTTGATCAAAACTTTGGCACTTAGTATCATAATTACTTGTACATGATGAGGTGTGAATGCGCCCATGTGAGTCTTACCAAATCGTGCCTCTAAATCTCTTTCCTTGAAG
Seq C2 exon
GGAACAAGTCTTCAACCCAGAAACAGTATAGGTGTGATGTGTGTGATTACACAAGTACAACATATGTCGGTGTCAGGAACCACAGACGAATCCATAACTCAGATAAGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565:ENSRNOT00000018153:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]